Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24033 | 3' | -54 | NC_005262.1 | + | 29162 | 0.71 | 0.551504 |
Target: 5'- gGCGCG-CGACCA--UGCGUCAggCGg -3' miRNA: 3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 49581 | 0.71 | 0.551504 |
Target: 5'- cGUGCAgaaGGCCGAcaagaaUGUGUCGCUCGg -3' miRNA: 3'- aCGCGUag-CUGGUUc-----ACGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 23256 | 0.71 | 0.551504 |
Target: 5'- -uCGCGUCGAUCAucGGUGCGUCcCgUCGc -3' miRNA: 3'- acGCGUAGCUGGU--UCACGCAGuG-AGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 35535 | 0.7 | 0.594903 |
Target: 5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3' miRNA: 3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 20713 | 0.69 | 0.62781 |
Target: 5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3' miRNA: 3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 45419 | 0.69 | 0.62781 |
Target: 5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3' miRNA: 3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 20586 | 0.66 | 0.796889 |
Target: 5'- aGCGCcgCG-CCGauGGUGCGcgcgauuacgCACUCGc -3' miRNA: 3'- aCGCGuaGCuGGU--UCACGCa---------GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 48170 | 0.67 | 0.787134 |
Target: 5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3' miRNA: 3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 51259 | 0.67 | 0.756947 |
Target: 5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3' miRNA: 3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 59024 | 0.68 | 0.725616 |
Target: 5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3' miRNA: 3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 62808 | 0.68 | 0.725616 |
Target: 5'- aGCGCGcCGAUCAgGGUGCGUgCGCg-- -3' miRNA: 3'- aCGCGUaGCUGGU-UCACGCA-GUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 23893 | 0.68 | 0.714971 |
Target: 5'- cUGCGCGucgucUCGAUCGuGGUGCGcuUCGCaUCGa -3' miRNA: 3'- -ACGCGU-----AGCUGGU-UCACGC--AGUG-AGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 51910 | 0.66 | 0.796889 |
Target: 5'- cGCGaCGUCGGCCGcgcugaAGU-CGUCGC-CGa -3' miRNA: 3'- aCGC-GUAGCUGGU------UCAcGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 30487 | 0.66 | 0.805523 |
Target: 5'- aGCGCAcgCGGCUcgugcuguacucgGGGUGCGccUUGCUCGu -3' miRNA: 3'- aCGCGUa-GCUGG-------------UUCACGC--AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 58531 | 0.66 | 0.806473 |
Target: 5'- cGCGCA-CGccuGCCGGG-GCGUC-CUUGa -3' miRNA: 3'- aCGCGUaGC---UGGUUCaCGCAGuGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 31314 | 0.66 | 0.806473 |
Target: 5'- gGCGCGUCGAUCGAcagGCG-CGCg-- -3' miRNA: 3'- aCGCGUAGCUGGUUca-CGCaGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 43137 | 0.66 | 0.806473 |
Target: 5'- cGCGCGgugcCGGCCGGGU-CGaugUACUCGu -3' miRNA: 3'- aCGCGUa---GCUGGUUCAcGCa--GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 7246 | 0.66 | 0.813074 |
Target: 5'- aGCgGCAUgCGGCCGGGUguuucgccuguuugGCGUCGCa-- -3' miRNA: 3'- aCG-CGUA-GCUGGUUCA--------------CGCAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 63044 | 0.66 | 0.819583 |
Target: 5'- cGCGUGUCGGCCGGaaGCGacgcgcgcaaaucgCGCUCGu -3' miRNA: 3'- aCGCGUAGCUGGUUcaCGCa-------------GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 33412 | 0.73 | 0.428956 |
Target: 5'- cGCGCAgCGACgCAGuUGCGUCcgACUCGa -3' miRNA: 3'- aCGCGUaGCUG-GUUcACGCAG--UGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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