miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 11271 0.66 0.825085
Target:  5'- cGCGCA-CGAUCAcGgcgGCGUCG-UCGg -3'
miRNA:   3'- aCGCGUaGCUGGUuCa--CGCAGUgAGC- -5'
24033 3' -54 NC_005262.1 + 9063 0.69 0.632206
Target:  5'- aUGCGCgggGUUGGCUggcuccggaugggugGAGUGCGUCGCcCGc -3'
miRNA:   3'- -ACGCG---UAGCUGG---------------UUCACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 61051 0.69 0.62781
Target:  5'- -aCGCAUCGAgCGAGUGauuGUCGCUg- -3'
miRNA:   3'- acGCGUAGCUgGUUCACg--CAGUGAgc -5'
24033 3' -54 NC_005262.1 + 33412 0.73 0.428956
Target:  5'- cGCGCAgCGACgCAGuUGCGUCcgACUCGa -3'
miRNA:   3'- aCGCGUaGCUG-GUUcACGCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 31314 0.66 0.806473
Target:  5'- gGCGCGUCGAUCGAcagGCG-CGCg-- -3'
miRNA:   3'- aCGCGUAGCUGGUUca-CGCaGUGagc -5'
24033 3' -54 NC_005262.1 + 58531 0.66 0.806473
Target:  5'- cGCGCA-CGccuGCCGGG-GCGUC-CUUGa -3'
miRNA:   3'- aCGCGUaGC---UGGUUCaCGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 51910 0.66 0.796889
Target:  5'- cGCGaCGUCGGCCGcgcugaAGU-CGUCGC-CGa -3'
miRNA:   3'- aCGC-GUAGCUGGU------UCAcGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 20586 0.66 0.796889
Target:  5'- aGCGCcgCG-CCGauGGUGCGcgcgauuacgCACUCGc -3'
miRNA:   3'- aCGCGuaGCuGGU--UCACGCa---------GUGAGC- -5'
24033 3' -54 NC_005262.1 + 59024 0.68 0.725616
Target:  5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3'
miRNA:   3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5'
24033 3' -54 NC_005262.1 + 44342 0.69 0.649782
Target:  5'- cGCGCGUCaGCCAguGGcGCGagccaUCGCUCGc -3'
miRNA:   3'- aCGCGUAGcUGGU--UCaCGC-----AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 23893 0.68 0.714971
Target:  5'- cUGCGCGucgucUCGAUCGuGGUGCGcuUCGCaUCGa -3'
miRNA:   3'- -ACGCGU-----AGCUGGU-UCACGC--AGUG-AGC- -5'
24033 3' -54 NC_005262.1 + 51259 0.67 0.756947
Target:  5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3'
miRNA:   3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 63044 0.66 0.819583
Target:  5'- cGCGUGUCGGCCGGaaGCGacgcgcgcaaaucgCGCUCGu -3'
miRNA:   3'- aCGCGUAGCUGGUUcaCGCa-------------GUGAGC- -5'
24033 3' -54 NC_005262.1 + 46468 0.68 0.704245
Target:  5'- cGCGCcuguUCGGCCuugauUGCGUC-CUCGc -3'
miRNA:   3'- aCGCGu---AGCUGGuuc--ACGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 7246 0.66 0.813074
Target:  5'- aGCgGCAUgCGGCCGGGUguuucgccuguuugGCGUCGCa-- -3'
miRNA:   3'- aCG-CGUA-GCUGGUUCA--------------CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 48170 0.67 0.787134
Target:  5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3'
miRNA:   3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5'
24033 3' -54 NC_005262.1 + 27105 0.68 0.681505
Target:  5'- gGCuGCuUCGAUCAuggucauuccuccAGUGCGgcgCGCUCGg -3'
miRNA:   3'- aCG-CGuAGCUGGU-------------UCACGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 30914 0.69 0.62781
Target:  5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3'
miRNA:   3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 43137 0.66 0.806473
Target:  5'- cGCGCGgugcCGGCCGGGU-CGaugUACUCGu -3'
miRNA:   3'- aCGCGUa---GCUGGUUCAcGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 30487 0.66 0.805523
Target:  5'- aGCGCAcgCGGCUcgugcuguacucgGGGUGCGccUUGCUCGu -3'
miRNA:   3'- aCGCGUa-GCUGG-------------UUCACGC--AGUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.