Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24033 | 3' | -54 | NC_005262.1 | + | 30914 | 0.69 | 0.62781 |
Target: 5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3' miRNA: 3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 49447 | 0.7 | 0.562278 |
Target: 5'- cGCGCGUCG-CCGAGU-CGUCAg-CGa -3' miRNA: 3'- aCGCGUAGCuGGUUCAcGCAGUgaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 62808 | 0.68 | 0.725616 |
Target: 5'- aGCGCGcCGAUCAgGGUGCGUgCGCg-- -3' miRNA: 3'- aCGCGUaGCUGGU-UCACGCA-GUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 59024 | 0.68 | 0.725616 |
Target: 5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3' miRNA: 3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 51259 | 0.67 | 0.756947 |
Target: 5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3' miRNA: 3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 5082 | 0.71 | 0.55043 |
Target: 5'- gGCGCGUgCGACCGgcucggcGGUGCG-CGCcCGg -3' miRNA: 3'- aCGCGUA-GCUGGU-------UCACGCaGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 14227 | 0.66 | 0.796889 |
Target: 5'- gGCGCgauGUCGACCAcgcacgagcAGgacgcaGCGUCGC-CGg -3' miRNA: 3'- aCGCG---UAGCUGGU---------UCa-----CGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 29162 | 0.71 | 0.551504 |
Target: 5'- gGCGCG-CGACCA--UGCGUCAggCGg -3' miRNA: 3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 35535 | 0.7 | 0.594903 |
Target: 5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3' miRNA: 3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 20713 | 0.69 | 0.62781 |
Target: 5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3' miRNA: 3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 45419 | 0.69 | 0.62781 |
Target: 5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3' miRNA: 3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 766 | 0.69 | 0.638799 |
Target: 5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3' miRNA: 3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 14004 | 0.69 | 0.649782 |
Target: 5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3' miRNA: 3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 15718 | 0.69 | 0.649782 |
Target: 5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3' miRNA: 3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 16990 | 0.67 | 0.767151 |
Target: 5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3' miRNA: 3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 59264 | 0.67 | 0.767151 |
Target: 5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3' miRNA: 3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 62079 | 0.67 | 0.767151 |
Target: 5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3' miRNA: 3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 44415 | 0.66 | 0.793007 |
Target: 5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3' miRNA: 3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 11770 | 0.66 | 0.796889 |
Target: 5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3' miRNA: 3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 28816 | 0.66 | 0.796889 |
Target: 5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3' miRNA: 3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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