miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 30914 0.69 0.62781
Target:  5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3'
miRNA:   3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 49447 0.7 0.562278
Target:  5'- cGCGCGUCG-CCGAGU-CGUCAg-CGa -3'
miRNA:   3'- aCGCGUAGCuGGUUCAcGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 62808 0.68 0.725616
Target:  5'- aGCGCGcCGAUCAgGGUGCGUgCGCg-- -3'
miRNA:   3'- aCGCGUaGCUGGU-UCACGCA-GUGagc -5'
24033 3' -54 NC_005262.1 + 59024 0.68 0.725616
Target:  5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3'
miRNA:   3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5'
24033 3' -54 NC_005262.1 + 51259 0.67 0.756947
Target:  5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3'
miRNA:   3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 5082 0.71 0.55043
Target:  5'- gGCGCGUgCGACCGgcucggcGGUGCG-CGCcCGg -3'
miRNA:   3'- aCGCGUA-GCUGGU-------UCACGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 14227 0.66 0.796889
Target:  5'- gGCGCgauGUCGACCAcgcacgagcAGgacgcaGCGUCGC-CGg -3'
miRNA:   3'- aCGCG---UAGCUGGU---------UCa-----CGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 29162 0.71 0.551504
Target:  5'- gGCGCG-CGACCA--UGCGUCAggCGg -3'
miRNA:   3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 35535 0.7 0.594903
Target:  5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3'
miRNA:   3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 20713 0.69 0.62781
Target:  5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3'
miRNA:   3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 45419 0.69 0.62781
Target:  5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3'
miRNA:   3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5'
24033 3' -54 NC_005262.1 + 766 0.69 0.638799
Target:  5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3'
miRNA:   3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5'
24033 3' -54 NC_005262.1 + 14004 0.69 0.649782
Target:  5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3'
miRNA:   3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 16990 0.67 0.767151
Target:  5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3'
miRNA:   3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 59264 0.67 0.767151
Target:  5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3'
miRNA:   3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 62079 0.67 0.767151
Target:  5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3'
miRNA:   3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 44415 0.66 0.793007
Target:  5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3'
miRNA:   3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 11770 0.66 0.796889
Target:  5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3'
miRNA:   3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5'
24033 3' -54 NC_005262.1 + 28816 0.66 0.796889
Target:  5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3'
miRNA:   3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.