miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 28816 0.66 0.796889
Target:  5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3'
miRNA:   3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 11770 0.66 0.796889
Target:  5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3'
miRNA:   3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5'
24033 3' -54 NC_005262.1 + 44415 0.66 0.793007
Target:  5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3'
miRNA:   3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 62079 0.67 0.767151
Target:  5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3'
miRNA:   3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 59264 0.67 0.767151
Target:  5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3'
miRNA:   3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 35320 0.67 0.746615
Target:  5'- gGCGCAUCGGCCAucacgGUCACg-- -3'
miRNA:   3'- aCGCGUAGCUGGUucacgCAGUGagc -5'
24033 3' -54 NC_005262.1 + 1550 0.68 0.714971
Target:  5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3'
miRNA:   3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5'
24033 3' -54 NC_005262.1 + 53935 0.68 0.701013
Target:  5'- gGCGCAgcUCGACCAGcucacggauggcgcGUGggaacaGUCGCUCa -3'
miRNA:   3'- aCGCGU--AGCUGGUU--------------CACg-----CAGUGAGc -5'
24033 3' -54 NC_005262.1 + 34641 0.68 0.693448
Target:  5'- --aGC-UCGACCcg--GCGUCGCUCGa -3'
miRNA:   3'- acgCGuAGCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 31702 1.1 0.001382
Target:  5'- gUGCGCAUCGACCAAGUGCGUCACUCGg -3'
miRNA:   3'- -ACGCGUAGCUGGUUCACGCAGUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.