miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 16130 0.66 0.729486
Target:  5'- aGUCGCGguAGCG-GCGGUUgAUGAUc -3'
miRNA:   3'- -CAGCGCguUCGCgUGCCAGgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 63355 0.66 0.729486
Target:  5'- cGUCaaGCAGGCG-GCGGcugCCACGAUg -3'
miRNA:   3'- -CAGcgCGUUCGCgUGCCa--GGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 60911 0.66 0.729486
Target:  5'- aUCGCGUAggccGGCGCAaacUCUGCGACAg -3'
miRNA:   3'- cAGCGCGU----UCGCGUgccAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 17259 0.66 0.729486
Target:  5'- gGUCGCGUccucGCGCGCGG-CCuugcCGGCc -3'
miRNA:   3'- -CAGCGCGuu--CGCGUGCCaGGu---GUUGu -5'
24033 5' -55.9 NC_005262.1 + 47257 0.66 0.726331
Target:  5'- -gCGCcaGCAGGCGCaggacaaggcgaaaACGGacgCCGCGGCGa -3'
miRNA:   3'- caGCG--CGUUCGCG--------------UGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 45924 0.66 0.723166
Target:  5'- cUCGUgaucggcaucaucaGCGAGCGCaugcagcacgaguaGCGGUCCugGAUc -3'
miRNA:   3'- cAGCG--------------CGUUCGCG--------------UGCCAGGugUUGu -5'
24033 5' -55.9 NC_005262.1 + 58448 0.66 0.718935
Target:  5'- -aCGCcccgGCAGGCGUgcGCGGcgUCACGACGu -3'
miRNA:   3'- caGCG----CGUUCGCG--UGCCa-GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12868 0.66 0.718935
Target:  5'- uUCGCGCugccGUGCACGGUgaCGCucguGCGc -3'
miRNA:   3'- cAGCGCGuu--CGCGUGCCAg-GUGu---UGU- -5'
24033 5' -55.9 NC_005262.1 + 46409 0.66 0.718935
Target:  5'- cGUCGgGCuGGGCccGCAaGGUCCGCAGgGg -3'
miRNA:   3'- -CAGCgCG-UUCG--CGUgCCAGGUGUUgU- -5'
24033 5' -55.9 NC_005262.1 + 56931 0.66 0.718935
Target:  5'- -cCGCGCucgagAAGCGCACGccgaUCCGCGcggGCGa -3'
miRNA:   3'- caGCGCG-----UUCGCGUGCc---AGGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 50495 0.66 0.708299
Target:  5'- cUCGCGCuccgcGGCGCugaucgccgcGCGGUUCGCGu-- -3'
miRNA:   3'- cAGCGCGu----UCGCG----------UGCCAGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 51162 0.66 0.708299
Target:  5'- aGUCGC-CGAGCGCGCagcaGGcagCCgACGACGc -3'
miRNA:   3'- -CAGCGcGUUCGCGUG----CCa--GG-UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 6820 0.66 0.708299
Target:  5'- -gCGCGCGAGauguucgacaaGCACGGgCC-CGGCAu -3'
miRNA:   3'- caGCGCGUUCg----------CGUGCCaGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12965 0.66 0.708299
Target:  5'- -aUGCGCAcgAGCGuCACcGUgCACGGCAg -3'
miRNA:   3'- caGCGCGU--UCGC-GUGcCAgGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 54032 0.66 0.708299
Target:  5'- cUCGCcuacaGCAccaucgAGCGCACGGgCgACGACGg -3'
miRNA:   3'- cAGCG-----CGU------UCGCGUGCCaGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 31149 0.66 0.707231
Target:  5'- gGUCG-GCGAGCGCGucggcguCGGUCagcacCAGCAg -3'
miRNA:   3'- -CAGCgCGUUCGCGU-------GCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 1248 0.66 0.706163
Target:  5'- -cCGCGCAGGauggcaagccCGCGCGGcagcaucgaagcCCGCAGCGg -3'
miRNA:   3'- caGCGCGUUC----------GCGUGCCa-----------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 52042 0.66 0.706163
Target:  5'- --aGCGCAGGCGCGCGcGagcggccUCCACcuuguccgucgugAACAg -3'
miRNA:   3'- cagCGCGUUCGCGUGC-C-------AGGUG-------------UUGU- -5'
24033 5' -55.9 NC_005262.1 + 5085 0.66 0.701882
Target:  5'- -gCGUGCGAccggcucggcggugcGCGCcCGGUUCACGAUg -3'
miRNA:   3'- caGCGCGUU---------------CGCGuGCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 4711 0.66 0.69759
Target:  5'- cGUUGCGCAAGUGCGgguUGGUgaGCAGg- -3'
miRNA:   3'- -CAGCGCGUUCGCGU---GCCAggUGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.