miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 51323 0.66 0.686818
Target:  5'- --gGCGCAuccGCGCGCGGcaagaucgaaUCCGCcauGCAg -3'
miRNA:   3'- cagCGCGUu--CGCGUGCC----------AGGUGu--UGU- -5'
24033 5' -55.9 NC_005262.1 + 4711 0.66 0.69759
Target:  5'- cGUUGCGCAAGUGCGgguUGGUgaGCAGg- -3'
miRNA:   3'- -CAGCGCGUUCGCGU---GCCAggUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 27068 0.66 0.686818
Target:  5'- -aCGCGUucGUGCGCGaGcUCgGCGACAu -3'
miRNA:   3'- caGCGCGuuCGCGUGC-C-AGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 5085 0.66 0.701882
Target:  5'- -gCGUGCGAccggcucggcggugcGCGCcCGGUUCACGAUg -3'
miRNA:   3'- caGCGCGUU---------------CGCGuGCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 51162 0.66 0.708299
Target:  5'- aGUCGC-CGAGCGCGCagcaGGcagCCgACGACGc -3'
miRNA:   3'- -CAGCGcGUUCGCGUG----CCa--GG-UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 54032 0.66 0.708299
Target:  5'- cUCGCcuacaGCAccaucgAGCGCACGGgCgACGACGg -3'
miRNA:   3'- cAGCG-----CGU------UCGCGUGCCaGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12868 0.66 0.718935
Target:  5'- uUCGCGCugccGUGCACGGUgaCGCucguGCGc -3'
miRNA:   3'- cAGCGCGuu--CGCGUGCCAg-GUGu---UGU- -5'
24033 5' -55.9 NC_005262.1 + 46409 0.66 0.718935
Target:  5'- cGUCGgGCuGGGCccGCAaGGUCCGCAGgGg -3'
miRNA:   3'- -CAGCgCG-UUCG--CGUgCCAGGUGUUgU- -5'
24033 5' -55.9 NC_005262.1 + 58448 0.66 0.718935
Target:  5'- -aCGCcccgGCAGGCGUgcGCGGcgUCACGACGu -3'
miRNA:   3'- caGCG----CGUUCGCG--UGCCa-GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 17259 0.66 0.729486
Target:  5'- gGUCGCGUccucGCGCGCGG-CCuugcCGGCc -3'
miRNA:   3'- -CAGCGCGuu--CGCGUGCCaGGu---GUUGu -5'
24033 5' -55.9 NC_005262.1 + 26578 0.67 0.642228
Target:  5'- uUCGCGCAGGCauacGCugGcggccucaucaacGUCCGCAAg- -3'
miRNA:   3'- cAGCGCGUUCG----CGugC-------------CAGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 10453 0.67 0.64332
Target:  5'- cUCG-GCAAGcCGgGCGGaagCCGCGACGa -3'
miRNA:   3'- cAGCgCGUUC-GCgUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50454 0.67 0.64332
Target:  5'- -cCGCGCGAGgaggacggcCGCACGGUauuCGACAu -3'
miRNA:   3'- caGCGCGUUC---------GCGUGCCAgguGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 7477 0.67 0.654235
Target:  5'- -aCGCcaGCGGGCuaucCGCGGUCCugAACu -3'
miRNA:   3'- caGCG--CGUUCGc---GUGCCAGGugUUGu -5'
24033 5' -55.9 NC_005262.1 + 17096 0.67 0.632394
Target:  5'- -aCGCgGCGGGcCGCGaggaGGUCCACcGCGc -3'
miRNA:   3'- caGCG-CGUUC-GCGUg---CCAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 45661 0.67 0.66513
Target:  5'- cGUCGaacagauCGAGCGCAUGGUgCCGCAc-- -3'
miRNA:   3'- -CAGCgc-----GUUCGCGUGCCA-GGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 13384 0.67 0.66513
Target:  5'- -cUGCGCcuGGGCGCGCGcaUCCACGAg- -3'
miRNA:   3'- caGCGCG--UUCGCGUGCc-AGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 51962 0.67 0.610553
Target:  5'- cUCGCGCGcgccuGCGCucgaaacugucCGGUUCGCAACu -3'
miRNA:   3'- cAGCGCGUu----CGCGu----------GCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 59391 0.67 0.610553
Target:  5'- cUCGCGCAgcaGGCGCGCGacaUCGCAcgcGCAa -3'
miRNA:   3'- cAGCGCGU---UCGCGUGCca-GGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 55227 0.67 0.654235
Target:  5'- cGUCGCGCAGGC-CGCGcUCaACAAUc -3'
miRNA:   3'- -CAGCGCGUUCGcGUGCcAGgUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.