miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 50454 0.67 0.64332
Target:  5'- -cCGCGCGAGgaggacggcCGCACGGUauuCGACAu -3'
miRNA:   3'- caGCGCGUUC---------GCGUGCCAgguGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 33872 0.67 0.610553
Target:  5'- -cCGCGCGAGCGaugaGGUCgguaGCGGCGa -3'
miRNA:   3'- caGCGCGUUCGCgug-CCAGg---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 54286 0.67 0.621469
Target:  5'- cUCGCGCGGGCGC-UGGagCACGc-- -3'
miRNA:   3'- cAGCGCGUUCGCGuGCCagGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 27147 0.67 0.621469
Target:  5'- cUCGCGCAcgaacgcguAGCGCGugaGGUCgAUGGCGg -3'
miRNA:   3'- cAGCGCGU---------UCGCGUg--CCAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 1626 0.67 0.621469
Target:  5'- gGUCGCGCAacgcuGGCGCuguucacgcaauACGuUCCGCcGCAg -3'
miRNA:   3'- -CAGCGCGU-----UCGCG------------UGCcAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 55726 0.67 0.632394
Target:  5'- -aCGCGgccaCGAGCGCGCGG-CC-CGGCu -3'
miRNA:   3'- caGCGC----GUUCGCGUGCCaGGuGUUGu -5'
24033 5' -55.9 NC_005262.1 + 46646 0.67 0.64332
Target:  5'- gGUCGuCGUggGCGuCGCGGgagCgGCGGCc -3'
miRNA:   3'- -CAGC-GCGuuCGC-GUGCCa--GgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 38027 0.67 0.64332
Target:  5'- --gGCGUuGGCGuCGCGGUCCAUg--- -3'
miRNA:   3'- cagCGCGuUCGC-GUGCCAGGUGuugu -5'
24033 5' -55.9 NC_005262.1 + 11075 0.67 0.64332
Target:  5'- -cCGUGCGAGCGCGacCGGcguUCC-CGGCGc -3'
miRNA:   3'- caGCGCGUUCGCGU--GCC---AGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 44229 0.67 0.64332
Target:  5'- aUCGCGCGcGCGUcCGG-CCGgAACGc -3'
miRNA:   3'- cAGCGCGUuCGCGuGCCaGGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 59391 0.67 0.610553
Target:  5'- cUCGCGCAgcaGGCGCGCGacaUCGCAcgcGCAa -3'
miRNA:   3'- cAGCGCGU---UCGCGUGCca-GGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 10453 0.67 0.64332
Target:  5'- cUCG-GCAAGcCGgGCGGaagCCGCGACGa -3'
miRNA:   3'- cAGCgCGUUC-GCgUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 26578 0.67 0.642228
Target:  5'- uUCGCGCAGGCauacGCugGcggccucaucaacGUCCGCAAg- -3'
miRNA:   3'- cAGCGCGUUCG----CGugC-------------CAGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 17096 0.67 0.632394
Target:  5'- -aCGCgGCGGGcCGCGaggaGGUCCACcGCGc -3'
miRNA:   3'- caGCG-CGUUC-GCGUg---CCAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 24729 0.67 0.621469
Target:  5'- aUCGCGCuGGCGCGCGcGaUCgGCGuGCGg -3'
miRNA:   3'- cAGCGCGuUCGCGUGC-C-AGgUGU-UGU- -5'
24033 5' -55.9 NC_005262.1 + 18176 0.67 0.621469
Target:  5'- aUCGCGCGAGCGCcccaaagaagaACGGcucUCCGgAAa- -3'
miRNA:   3'- cAGCGCGUUCGCG-----------UGCC---AGGUgUUgu -5'
24033 5' -55.9 NC_005262.1 + 54422 0.67 0.621469
Target:  5'- cUCGCGgAGGCGCA-GG-CCGCcGCGc -3'
miRNA:   3'- cAGCGCgUUCGCGUgCCaGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 11480 0.67 0.621469
Target:  5'- -gCGCGCGAGCaCAUGGgCCGCGu-- -3'
miRNA:   3'- caGCGCGUUCGcGUGCCaGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 10905 0.67 0.654235
Target:  5'- -aCGCGCAuGCGC-UGGUCgugaucguCGCGGCAg -3'
miRNA:   3'- caGCGCGUuCGCGuGCCAG--------GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 32648 0.68 0.599655
Target:  5'- aUUGCGCGGGCGaucaGGUCUGCGAa- -3'
miRNA:   3'- cAGCGCGUUCGCgug-CCAGGUGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.