Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24033 | 5' | -55.9 | NC_005262.1 | + | 5277 | 0.68 | 0.588785 |
Target: 5'- gGUCGCGCcGGcCGCGCccgcGcCCGCGACGc -3' miRNA: 3'- -CAGCGCGuUC-GCGUGc---CaGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 13228 | 0.68 | 0.582279 |
Target: 5'- -cCGCGCAGcGCGCGCGGcggaccuaauugugCCACGGu- -3' miRNA: 3'- caGCGCGUU-CGCGUGCCa-------------GGUGUUgu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 46904 | 0.68 | 0.577951 |
Target: 5'- cUCG-GCGAGCGCGCGGgCCu--GCAc -3' miRNA: 3'- cAGCgCGUUCGCGUGCCaGGuguUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 50251 | 0.68 | 0.56716 |
Target: 5'- uUCGUcaGguAGCGCagGCGGUCgCGCAGCu -3' miRNA: 3'- cAGCG--CguUCGCG--UGCCAG-GUGUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 42760 | 0.68 | 0.56716 |
Target: 5'- -gCGUGCGGGCGcCACGGcUCGCAGa- -3' miRNA: 3'- caGCGCGUUCGC-GUGCCaGGUGUUgu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 11672 | 0.68 | 0.599655 |
Target: 5'- aGUCGCuCGAGCGCugGccgCCGcCGGCAu -3' miRNA: 3'- -CAGCGcGUUCGCGugCca-GGU-GUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 32648 | 0.68 | 0.599655 |
Target: 5'- aUUGCGCGGGCGaucaGGUCUGCGAa- -3' miRNA: 3'- cAGCGCGUUCGCgug-CCAGGUGUUgu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 54799 | 0.68 | 0.599655 |
Target: 5'- cGUCGCGCAGaagauGCGCGCGGcguuuagCCGauggauuuggacCGACAc -3' miRNA: 3'- -CAGCGCGUU-----CGCGUGCCa------GGU------------GUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 23360 | 0.68 | 0.599655 |
Target: 5'- --gGCGUgAAGCGCGCGGcggcgaaggcCCGCAACGu -3' miRNA: 3'- cagCGCG-UUCGCGUGCCa---------GGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 16729 | 0.68 | 0.599655 |
Target: 5'- -gUGCGCAccgGGCaGCACGgGUCUGCGAUg -3' miRNA: 3'- caGCGCGU---UCG-CGUGC-CAGGUGUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 11384 | 0.68 | 0.588785 |
Target: 5'- -aCGaCGUucGCGCGCGGcUCCACGcCGa -3' miRNA: 3'- caGC-GCGuuCGCGUGCC-AGGUGUuGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 57682 | 0.68 | 0.577951 |
Target: 5'- cUCGCGCGccgGGCGCGgcaaggugcuuuCGGUaggccgCCACGACGc -3' miRNA: 3'- cAGCGCGU---UCGCGU------------GCCA------GGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 17547 | 0.68 | 0.56716 |
Target: 5'- gGUCGCGC--GCGagGCGGcagCCGCGGCGg -3' miRNA: 3'- -CAGCGCGuuCGCg-UGCCa--GGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 11947 | 0.68 | 0.577951 |
Target: 5'- aUgGCGCAcGCGCugGGgaUCgACGGCGa -3' miRNA: 3'- cAgCGCGUuCGCGugCC--AGgUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 59005 | 0.69 | 0.513091 |
Target: 5'- cGUCGCGCuucgaccgucugcAAGC-CGCGGUgCAgGACAa -3' miRNA: 3'- -CAGCGCG-------------UUCGcGUGCCAgGUgUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 28885 | 0.69 | 0.53513 |
Target: 5'- -aUGCGCGGGCGCGaGGUCacgguCGACGu -3' miRNA: 3'- caGCGCGUUCGCGUgCCAGgu---GUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 13557 | 0.69 | 0.53513 |
Target: 5'- -gCGCGCGAcGCGCGCGGgcUUCGCGcccuuGCGa -3' miRNA: 3'- caGCGCGUU-CGCGUGCC--AGGUGU-----UGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 57275 | 0.69 | 0.493479 |
Target: 5'- cUCGCGC-AGCuCACGGcCCGCGuGCAg -3' miRNA: 3'- cAGCGCGuUCGcGUGCCaGGUGU-UGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 36277 | 0.69 | 0.493479 |
Target: 5'- -aUGCGUggGCGCGCGGcgaCGCgAACAc -3' miRNA: 3'- caGCGCGuuCGCGUGCCag-GUG-UUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 15310 | 0.69 | 0.514133 |
Target: 5'- -cCGCGCAugGGCGgGCGG-CCgucgaGCAACAg -3' miRNA: 3'- caGCGCGU--UCGCgUGCCaGG-----UGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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