Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24033 | 5' | -55.9 | NC_005262.1 | + | 31748 | 1.08 | 0.001145 |
Target: 5'- uGUCGCGCAAGCGCACGGUCCACAACAu -3' miRNA: 3'- -CAGCGCGUUCGCGUGCCAGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 45220 | 0.83 | 0.070687 |
Target: 5'- uGUCGCGCAcguucuGGCGCGCGGUguUCGCGGCAc -3' miRNA: 3'- -CAGCGCGU------UCGCGUGCCA--GGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 49235 | 0.77 | 0.168146 |
Target: 5'- -gCGCGCAGuccGCGCGCgaGGUCCGCGACc -3' miRNA: 3'- caGCGCGUU---CGCGUG--CCAGGUGUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 58784 | 0.76 | 0.202796 |
Target: 5'- -cCGCGUuccGGCGCugGGUCgACGACGu -3' miRNA: 3'- caGCGCGu--UCGCGugCCAGgUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 48947 | 0.75 | 0.249816 |
Target: 5'- aGUUGCGCGggguGCGUccaGCGGUCgACAGCAu -3' miRNA: 3'- -CAGCGCGUu---CGCG---UGCCAGgUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 17572 | 0.74 | 0.256289 |
Target: 5'- cGUCGCGCGcGGCGCGCGcuucGUCCugGAa- -3' miRNA: 3'- -CAGCGCGU-UCGCGUGC----CAGGugUUgu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 12329 | 0.74 | 0.276532 |
Target: 5'- cUCGUGCcgcAGCGCGCGG-CgGCAGCAu -3' miRNA: 3'- cAGCGCGu--UCGCGUGCCaGgUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 49160 | 0.74 | 0.276532 |
Target: 5'- -gCGUGCAGGcCGCAuCGG-CCGCAGCGg -3' miRNA: 3'- caGCGCGUUC-GCGU-GCCaGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 11030 | 0.74 | 0.290001 |
Target: 5'- uGUCGCGCAAgaccGCGCGCagcaacaGG-CCGCAGCGu -3' miRNA: 3'- -CAGCGCGUU----CGCGUG-------CCaGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 62718 | 0.73 | 0.320804 |
Target: 5'- aUCGCGCAcgcacccugaucGGCGCgcugGCGGUcagcgCCGCAGCAu -3' miRNA: 3'- cAGCGCGU------------UCGCG----UGCCA-----GGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 25742 | 0.73 | 0.327093 |
Target: 5'- aUCGCGCAGGCcggcaagccgcuCACGGcCCGCGACu -3' miRNA: 3'- cAGCGCGUUCGc-----------GUGCCaGGUGUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 22763 | 0.72 | 0.361595 |
Target: 5'- -gCGCGUcuGCGCACuGGUCCGCGc-- -3' miRNA: 3'- caGCGCGuuCGCGUG-CCAGGUGUugu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 10779 | 0.72 | 0.370174 |
Target: 5'- -cCGCGcCGGGCGCGCGGUaCUGCuGCGc -3' miRNA: 3'- caGCGC-GUUCGCGUGCCA-GGUGuUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 17333 | 0.72 | 0.370174 |
Target: 5'- --aGCGCGAGCGCgucGCGGcgaUCCGCGAgAa -3' miRNA: 3'- cagCGCGUUCGCG---UGCC---AGGUGUUgU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 37922 | 0.72 | 0.378892 |
Target: 5'- aUCGCGUGGacgauuggcGCGCAUGGaCCGCGACGc -3' miRNA: 3'- cAGCGCGUU---------CGCGUGCCaGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 50177 | 0.71 | 0.387746 |
Target: 5'- uUCGCGC-GGCGCGgguuCGGUCggCGCAGCGg -3' miRNA: 3'- cAGCGCGuUCGCGU----GCCAG--GUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 48172 | 0.71 | 0.396735 |
Target: 5'- aUCGCGCGucGGCGCcggGCGGcucgUCGCGGCAg -3' miRNA: 3'- cAGCGCGU--UCGCG---UGCCa---GGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 18295 | 0.71 | 0.396735 |
Target: 5'- uUCGgGUAGGCGCGcCGGUUCGCuucGCGg -3' miRNA: 3'- cAGCgCGUUCGCGU-GCCAGGUGu--UGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 53811 | 0.71 | 0.405857 |
Target: 5'- aGUCGCGUucGAGCGcCACGG-CCuuCGACGc -3' miRNA: 3'- -CAGCGCG--UUCGC-GUGCCaGGu-GUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 28168 | 0.71 | 0.41511 |
Target: 5'- --gGCGCAAcuGCGCGCGGcggCCGuCGACAa -3' miRNA: 3'- cagCGCGUU--CGCGUGCCa--GGU-GUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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