miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 25629 0.71 0.424491
Target:  5'- aUCGUGCcgccGCGCACGGacgUCGCGACGc -3'
miRNA:   3'- cAGCGCGuu--CGCGUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 53484 0.71 0.424491
Target:  5'- -cCGUGCcGGCGUuguccuugaacGCGGUCUGCGGCAg -3'
miRNA:   3'- caGCGCGuUCGCG-----------UGCCAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 40590 0.71 0.433998
Target:  5'- cGUCGCGCugacgguGGCGCAgaugCCGCAGCAu -3'
miRNA:   3'- -CAGCGCGu------UCGCGUgccaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48050 0.7 0.443627
Target:  5'- -gCGCccGCAAGCGCGuCGGUcgcaccugCCGCGACGa -3'
miRNA:   3'- caGCG--CGUUCGCGU-GCCA--------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 23690 0.7 0.443627
Target:  5'- --gGCGCGugugggucuaccGGCGCACGGUCgaccaCGCGGCGa -3'
miRNA:   3'- cagCGCGU------------UCGCGUGCCAG-----GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 13066 0.7 0.453375
Target:  5'- -aCGCGCGGGU-CGCGGUCguCGACGc -3'
miRNA:   3'- caGCGCGUUCGcGUGCCAGguGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 42737 0.7 0.463238
Target:  5'- cGUCGCGCucGGCGCcuACGG--CACGACGa -3'
miRNA:   3'- -CAGCGCGu-UCGCG--UGCCagGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11548 0.7 0.470209
Target:  5'- -gCGCGCGAGCGCgguaggcacgaugcGCGGg-CGCGGCGu -3'
miRNA:   3'- caGCGCGUUCGCG--------------UGCCagGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 42071 0.7 0.483295
Target:  5'- cGUCGCGUucuGCGCGgCGGUgUcagGCAACAg -3'
miRNA:   3'- -CAGCGCGuu-CGCGU-GCCAgG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 57275 0.69 0.493479
Target:  5'- cUCGCGC-AGCuCACGGcCCGCGuGCAg -3'
miRNA:   3'- cAGCGCGuUCGcGUGCCaGGUGU-UGU- -5'
24033 5' -55.9 NC_005262.1 + 11130 0.69 0.493479
Target:  5'- -aCGCuGCGGccuguugcuGCGCGCGGUCUugcGCGACAg -3'
miRNA:   3'- caGCG-CGUU---------CGCGUGCCAGG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 36277 0.69 0.493479
Target:  5'- -aUGCGUggGCGCGCGGcgaCGCgAACAc -3'
miRNA:   3'- caGCGCGuuCGCGUGCCag-GUG-UUGU- -5'
24033 5' -55.9 NC_005262.1 + 28813 0.69 0.50376
Target:  5'- --gGCGUccGGGCGCGCGGcCuCGCGGCGg -3'
miRNA:   3'- cagCGCG--UUCGCGUGCCaG-GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 59005 0.69 0.513091
Target:  5'- cGUCGCGCuucgaccgucugcAAGC-CGCGGUgCAgGACAa -3'
miRNA:   3'- -CAGCGCG-------------UUCGcGUGCCAgGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 15310 0.69 0.514133
Target:  5'- -cCGCGCAugGGCGgGCGG-CCgucgaGCAACAg -3'
miRNA:   3'- caGCGCGU--UCGCgUGCCaGG-----UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 10858 0.69 0.524591
Target:  5'- -cCGCGCGcccGGCGCggGCGGaucaCCACAACc -3'
miRNA:   3'- caGCGCGU---UCGCG--UGCCa---GGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 28885 0.69 0.53513
Target:  5'- -aUGCGCGGGCGCGaGGUCacgguCGACGu -3'
miRNA:   3'- caGCGCGUUCGCGUgCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 13557 0.69 0.53513
Target:  5'- -gCGCGCGAcGCGCGCGGgcUUCGCGcccuuGCGa -3'
miRNA:   3'- caGCGCGUU-CGCGUGCC--AGGUGU-----UGU- -5'
24033 5' -55.9 NC_005262.1 + 42760 0.68 0.56716
Target:  5'- -gCGUGCGGGCGcCACGGcUCGCAGa- -3'
miRNA:   3'- caGCGCGUUCGC-GUGCCaGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 50251 0.68 0.56716
Target:  5'- uUCGUcaGguAGCGCagGCGGUCgCGCAGCu -3'
miRNA:   3'- cAGCG--CguUCGCG--UGCCAG-GUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.