miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 17547 0.68 0.56716
Target:  5'- gGUCGCGC--GCGagGCGGcagCCGCGGCGg -3'
miRNA:   3'- -CAGCGCGuuCGCg-UGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 46904 0.68 0.577951
Target:  5'- cUCG-GCGAGCGCGCGGgCCu--GCAc -3'
miRNA:   3'- cAGCgCGUUCGCGUGCCaGGuguUGU- -5'
24033 5' -55.9 NC_005262.1 + 11947 0.68 0.577951
Target:  5'- aUgGCGCAcGCGCugGGgaUCgACGGCGa -3'
miRNA:   3'- cAgCGCGUuCGCGugCC--AGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 57682 0.68 0.577951
Target:  5'- cUCGCGCGccgGGCGCGgcaaggugcuuuCGGUaggccgCCACGACGc -3'
miRNA:   3'- cAGCGCGU---UCGCGU------------GCCA------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 13228 0.68 0.582279
Target:  5'- -cCGCGCAGcGCGCGCGGcggaccuaauugugCCACGGu- -3'
miRNA:   3'- caGCGCGUU-CGCGUGCCa-------------GGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 11384 0.68 0.588785
Target:  5'- -aCGaCGUucGCGCGCGGcUCCACGcCGa -3'
miRNA:   3'- caGC-GCGuuCGCGUGCC-AGGUGUuGU- -5'
24033 5' -55.9 NC_005262.1 + 5277 0.68 0.588785
Target:  5'- gGUCGCGCcGGcCGCGCccgcGcCCGCGACGc -3'
miRNA:   3'- -CAGCGCGuUC-GCGUGc---CaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 16729 0.68 0.599655
Target:  5'- -gUGCGCAccgGGCaGCACGgGUCUGCGAUg -3'
miRNA:   3'- caGCGCGU---UCG-CGUGC-CAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 23360 0.68 0.599655
Target:  5'- --gGCGUgAAGCGCGCGGcggcgaaggcCCGCAACGu -3'
miRNA:   3'- cagCGCG-UUCGCGUGCCa---------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 54799 0.68 0.599655
Target:  5'- cGUCGCGCAGaagauGCGCGCGGcguuuagCCGauggauuuggacCGACAc -3'
miRNA:   3'- -CAGCGCGUU-----CGCGUGCCa------GGU------------GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 32648 0.68 0.599655
Target:  5'- aUUGCGCGGGCGaucaGGUCUGCGAa- -3'
miRNA:   3'- cAGCGCGUUCGCgug-CCAGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 11672 0.68 0.599655
Target:  5'- aGUCGCuCGAGCGCugGccgCCGcCGGCAu -3'
miRNA:   3'- -CAGCGcGUUCGCGugCca-GGU-GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50429 0.68 0.599655
Target:  5'- gGUCGuCGCGGGCGCuucGUCCugcGCGGCGg -3'
miRNA:   3'- -CAGC-GCGUUCGCGugcCAGG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 33872 0.67 0.610553
Target:  5'- -cCGCGCGAGCGaugaGGUCgguaGCGGCGa -3'
miRNA:   3'- caGCGCGUUCGCgug-CCAGg---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 59391 0.67 0.610553
Target:  5'- cUCGCGCAgcaGGCGCGCGacaUCGCAcgcGCAa -3'
miRNA:   3'- cAGCGCGU---UCGCGUGCca-GGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 51962 0.67 0.610553
Target:  5'- cUCGCGCGcgccuGCGCucgaaacugucCGGUUCGCAACu -3'
miRNA:   3'- cAGCGCGUu----CGCGu----------GCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 1626 0.67 0.621469
Target:  5'- gGUCGCGCAacgcuGGCGCuguucacgcaauACGuUCCGCcGCAg -3'
miRNA:   3'- -CAGCGCGU-----UCGCG------------UGCcAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 54286 0.67 0.621469
Target:  5'- cUCGCGCGGGCGC-UGGagCACGc-- -3'
miRNA:   3'- cAGCGCGUUCGCGuGCCagGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 11480 0.67 0.621469
Target:  5'- -gCGCGCGAGCaCAUGGgCCGCGu-- -3'
miRNA:   3'- caGCGCGUUCGcGUGCCaGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 54422 0.67 0.621469
Target:  5'- cUCGCGgAGGCGCA-GG-CCGCcGCGc -3'
miRNA:   3'- cAGCGCgUUCGCGUgCCaGGUGuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.