miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 18176 0.67 0.621469
Target:  5'- aUCGCGCGAGCGCcccaaagaagaACGGcucUCCGgAAa- -3'
miRNA:   3'- cAGCGCGUUCGCG-----------UGCC---AGGUgUUgu -5'
24033 5' -55.9 NC_005262.1 + 54422 0.67 0.621469
Target:  5'- cUCGCGgAGGCGCA-GG-CCGCcGCGc -3'
miRNA:   3'- cAGCGCgUUCGCGUgCCaGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 11480 0.67 0.621469
Target:  5'- -gCGCGCGAGCaCAUGGgCCGCGu-- -3'
miRNA:   3'- caGCGCGUUCGcGUGCCaGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 17096 0.67 0.632394
Target:  5'- -aCGCgGCGGGcCGCGaggaGGUCCACcGCGc -3'
miRNA:   3'- caGCG-CGUUC-GCGUg---CCAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 25334 0.67 0.632394
Target:  5'- --gGCGCAGgagccggcguuGCGCGCGGUUCgggcggaaggGCAGCAc -3'
miRNA:   3'- cagCGCGUU-----------CGCGUGCCAGG----------UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 55726 0.67 0.632394
Target:  5'- -aCGCGgccaCGAGCGCGCGG-CC-CGGCu -3'
miRNA:   3'- caGCGC----GUUCGCGUGCCaGGuGUUGu -5'
24033 5' -55.9 NC_005262.1 + 26578 0.67 0.642228
Target:  5'- uUCGCGCAGGCauacGCugGcggccucaucaacGUCCGCAAg- -3'
miRNA:   3'- cAGCGCGUUCG----CGugC-------------CAGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 44229 0.67 0.64332
Target:  5'- aUCGCGCGcGCGUcCGG-CCGgAACGc -3'
miRNA:   3'- cAGCGCGUuCGCGuGCCaGGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11075 0.67 0.64332
Target:  5'- -cCGUGCGAGCGCGacCGGcguUCC-CGGCGc -3'
miRNA:   3'- caGCGCGUUCGCGU--GCC---AGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 38027 0.67 0.64332
Target:  5'- --gGCGUuGGCGuCGCGGUCCAUg--- -3'
miRNA:   3'- cagCGCGuUCGC-GUGCCAGGUGuugu -5'
24033 5' -55.9 NC_005262.1 + 10453 0.67 0.64332
Target:  5'- cUCG-GCAAGcCGgGCGGaagCCGCGACGa -3'
miRNA:   3'- cAGCgCGUUC-GCgUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50454 0.67 0.64332
Target:  5'- -cCGCGCGAGgaggacggcCGCACGGUauuCGACAu -3'
miRNA:   3'- caGCGCGUUC---------GCGUGCCAgguGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 46646 0.67 0.64332
Target:  5'- gGUCGuCGUggGCGuCGCGGgagCgGCGGCc -3'
miRNA:   3'- -CAGC-GCGuuCGC-GUGCCa--GgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 44021 0.67 0.653144
Target:  5'- cGUCGCGC-AGCGUguuguagucggccGCGGUUgGCGccGCGc -3'
miRNA:   3'- -CAGCGCGuUCGCG-------------UGCCAGgUGU--UGU- -5'
24033 5' -55.9 NC_005262.1 + 10905 0.67 0.654235
Target:  5'- -aCGCGCAuGCGC-UGGUCgugaucguCGCGGCAg -3'
miRNA:   3'- caGCGCGUuCGCGuGCCAG--------GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 55227 0.67 0.654235
Target:  5'- cGUCGCGCAGGC-CGCGcUCaACAAUc -3'
miRNA:   3'- -CAGCGCGUUCGcGUGCcAGgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 20782 0.67 0.654235
Target:  5'- aUCGCGCAcGCGCGCaucuUCCAUAucgaGCAg -3'
miRNA:   3'- cAGCGCGUuCGCGUGcc--AGGUGU----UGU- -5'
24033 5' -55.9 NC_005262.1 + 7477 0.67 0.654235
Target:  5'- -aCGCcaGCGGGCuaucCGCGGUCCugAACu -3'
miRNA:   3'- caGCG--CGUUCGc---GUGCCAGGugUUGu -5'
24033 5' -55.9 NC_005262.1 + 45661 0.67 0.66513
Target:  5'- cGUCGaacagauCGAGCGCAUGGUgCCGCAc-- -3'
miRNA:   3'- -CAGCgc-----GUUCGCGUGCCA-GGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 13384 0.67 0.66513
Target:  5'- -cUGCGCcuGGGCGCGCGcaUCCACGAg- -3'
miRNA:   3'- caGCGCG--UUCGCGUGCc-AGGUGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.