miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 1248 0.66 0.706163
Target:  5'- -cCGCGCAGGauggcaagccCGCGCGGcagcaucgaagcCCGCAGCGg -3'
miRNA:   3'- caGCGCGUUC----------GCGUGCCa-----------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 1626 0.67 0.621469
Target:  5'- gGUCGCGCAacgcuGGCGCuguucacgcaauACGuUCCGCcGCAg -3'
miRNA:   3'- -CAGCGCGU-----UCGCG------------UGCcAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 4711 0.66 0.69759
Target:  5'- cGUUGCGCAAGUGCGgguUGGUgaGCAGg- -3'
miRNA:   3'- -CAGCGCGUUCGCGU---GCCAggUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 5085 0.66 0.701882
Target:  5'- -gCGUGCGAccggcucggcggugcGCGCcCGGUUCACGAUg -3'
miRNA:   3'- caGCGCGUU---------------CGCGuGCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 5277 0.68 0.588785
Target:  5'- gGUCGCGCcGGcCGCGCccgcGcCCGCGACGc -3'
miRNA:   3'- -CAGCGCGuUC-GCGUGc---CaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 6820 0.66 0.708299
Target:  5'- -gCGCGCGAGauguucgacaaGCACGGgCC-CGGCAu -3'
miRNA:   3'- caGCGCGUUCg----------CGUGCCaGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 7477 0.67 0.654235
Target:  5'- -aCGCcaGCGGGCuaucCGCGGUCCugAACu -3'
miRNA:   3'- caGCG--CGUUCGc---GUGCCAGGugUUGu -5'
24033 5' -55.9 NC_005262.1 + 9603 0.66 0.69759
Target:  5'- -cCGCGCAuauugaaaAGCGguCGGgCCGCAAa- -3'
miRNA:   3'- caGCGCGU--------UCGCguGCCaGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 10453 0.67 0.64332
Target:  5'- cUCG-GCAAGcCGgGCGGaagCCGCGACGa -3'
miRNA:   3'- cAGCgCGUUC-GCgUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 10779 0.72 0.370174
Target:  5'- -cCGCGcCGGGCGCGCGGUaCUGCuGCGc -3'
miRNA:   3'- caGCGC-GUUCGCGUGCCA-GGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 10805 0.66 0.675994
Target:  5'- uUUGCGgGAGCGC-CGG-CCGCGugcGCGc -3'
miRNA:   3'- cAGCGCgUUCGCGuGCCaGGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 10858 0.69 0.524591
Target:  5'- -cCGCGCGcccGGCGCggGCGGaucaCCACAACc -3'
miRNA:   3'- caGCGCGU---UCGCG--UGCCa---GGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 10905 0.67 0.654235
Target:  5'- -aCGCGCAuGCGC-UGGUCgugaucguCGCGGCAg -3'
miRNA:   3'- caGCGCGUuCGCGuGCCAG--------GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11030 0.74 0.290001
Target:  5'- uGUCGCGCAAgaccGCGCGCagcaacaGG-CCGCAGCGu -3'
miRNA:   3'- -CAGCGCGUU----CGCGUG-------CCaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11075 0.67 0.64332
Target:  5'- -cCGUGCGAGCGCGacCGGcguUCC-CGGCGc -3'
miRNA:   3'- caGCGCGUUCGCGU--GCC---AGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11130 0.69 0.493479
Target:  5'- -aCGCuGCGGccuguugcuGCGCGCGGUCUugcGCGACAg -3'
miRNA:   3'- caGCG-CGUU---------CGCGUGCCAGG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11384 0.68 0.588785
Target:  5'- -aCGaCGUucGCGCGCGGcUCCACGcCGa -3'
miRNA:   3'- caGC-GCGuuCGCGUGCC-AGGUGUuGU- -5'
24033 5' -55.9 NC_005262.1 + 11480 0.67 0.621469
Target:  5'- -gCGCGCGAGCaCAUGGgCCGCGu-- -3'
miRNA:   3'- caGCGCGUUCGcGUGCCaGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 11548 0.7 0.470209
Target:  5'- -gCGCGCGAGCGCgguaggcacgaugcGCGGg-CGCGGCGu -3'
miRNA:   3'- caGCGCGUUCGCG--------------UGCCagGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11672 0.68 0.599655
Target:  5'- aGUCGCuCGAGCGCugGccgCCGcCGGCAu -3'
miRNA:   3'- -CAGCGcGUUCGCGugCca-GGU-GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.