miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 11947 0.68 0.577951
Target:  5'- aUgGCGCAcGCGCugGGgaUCgACGGCGa -3'
miRNA:   3'- cAgCGCGUuCGCGugCC--AGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12022 0.66 0.686818
Target:  5'- --gGCGCAaucuGGuCGCGCGcGUCCcCGGCAu -3'
miRNA:   3'- cagCGCGU----UC-GCGUGC-CAGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12329 0.74 0.276532
Target:  5'- cUCGUGCcgcAGCGCGCGG-CgGCAGCAu -3'
miRNA:   3'- cAGCGCGu--UCGCGUGCCaGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12868 0.66 0.718935
Target:  5'- uUCGCGCugccGUGCACGGUgaCGCucguGCGc -3'
miRNA:   3'- cAGCGCGuu--CGCGUGCCAg-GUGu---UGU- -5'
24033 5' -55.9 NC_005262.1 + 12965 0.66 0.708299
Target:  5'- -aUGCGCAcgAGCGuCACcGUgCACGGCAg -3'
miRNA:   3'- caGCGCGU--UCGC-GUGcCAgGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 13066 0.7 0.453375
Target:  5'- -aCGCGCGGGU-CGCGGUCguCGACGc -3'
miRNA:   3'- caGCGCGUUCGcGUGCCAGguGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 13228 0.68 0.582279
Target:  5'- -cCGCGCAGcGCGCGCGGcggaccuaauugugCCACGGu- -3'
miRNA:   3'- caGCGCGUU-CGCGUGCCa-------------GGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 13384 0.67 0.66513
Target:  5'- -cUGCGCcuGGGCGCGCGcaUCCACGAg- -3'
miRNA:   3'- caGCGCG--UUCGCGUGCc-AGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 13557 0.69 0.53513
Target:  5'- -gCGCGCGAcGCGCGCGGgcUUCGCGcccuuGCGa -3'
miRNA:   3'- caGCGCGUU-CGCGUGCC--AGGUGU-----UGU- -5'
24033 5' -55.9 NC_005262.1 + 15310 0.69 0.514133
Target:  5'- -cCGCGCAugGGCGgGCGG-CCgucgaGCAACAg -3'
miRNA:   3'- caGCGCGU--UCGCgUGCCaGG-----UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 16130 0.66 0.729486
Target:  5'- aGUCGCGguAGCG-GCGGUUgAUGAUc -3'
miRNA:   3'- -CAGCGCguUCGCgUGCCAGgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 16729 0.68 0.599655
Target:  5'- -gUGCGCAccgGGCaGCACGgGUCUGCGAUg -3'
miRNA:   3'- caGCGCGU---UCG-CGUGC-CAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 17096 0.67 0.632394
Target:  5'- -aCGCgGCGGGcCGCGaggaGGUCCACcGCGc -3'
miRNA:   3'- caGCG-CGUUC-GCGUg---CCAGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 17259 0.66 0.729486
Target:  5'- gGUCGCGUccucGCGCGCGG-CCuugcCGGCc -3'
miRNA:   3'- -CAGCGCGuu--CGCGUGCCaGGu---GUUGu -5'
24033 5' -55.9 NC_005262.1 + 17333 0.72 0.370174
Target:  5'- --aGCGCGAGCGCgucGCGGcgaUCCGCGAgAa -3'
miRNA:   3'- cagCGCGUUCGCG---UGCC---AGGUGUUgU- -5'
24033 5' -55.9 NC_005262.1 + 17547 0.68 0.56716
Target:  5'- gGUCGCGC--GCGagGCGGcagCCGCGGCGg -3'
miRNA:   3'- -CAGCGCGuuCGCg-UGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 17572 0.74 0.256289
Target:  5'- cGUCGCGCGcGGCGCGCGcuucGUCCugGAa- -3'
miRNA:   3'- -CAGCGCGU-UCGCGUGC----CAGGugUUgu -5'
24033 5' -55.9 NC_005262.1 + 18176 0.67 0.621469
Target:  5'- aUCGCGCGAGCGCcccaaagaagaACGGcucUCCGgAAa- -3'
miRNA:   3'- cAGCGCGUUCGCG-----------UGCC---AGGUgUUgu -5'
24033 5' -55.9 NC_005262.1 + 18295 0.71 0.396735
Target:  5'- uUCGgGUAGGCGCGcCGGUUCGCuucGCGg -3'
miRNA:   3'- cAGCgCGUUCGCGU-GCCAGGUGu--UGU- -5'
24033 5' -55.9 NC_005262.1 + 18498 0.67 0.66513
Target:  5'- aGUCGCGCucauugAGGCGCuCGGaagCCGguGCGg -3'
miRNA:   3'- -CAGCGCG------UUCGCGuGCCa--GGUguUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.