miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 20596 0.66 0.685737
Target:  5'- gGUCGuCGCGAGCGCcgcgccgAUGGUgCGCG-CGa -3'
miRNA:   3'- -CAGC-GCGUUCGCG-------UGCCAgGUGUuGU- -5'
24033 5' -55.9 NC_005262.1 + 20782 0.67 0.654235
Target:  5'- aUCGCGCAcGCGCGCaucuUCCAUAucgaGCAg -3'
miRNA:   3'- cAGCGCGUuCGCGUGcc--AGGUGU----UGU- -5'
24033 5' -55.9 NC_005262.1 + 22763 0.72 0.361595
Target:  5'- -gCGCGUcuGCGCACuGGUCCGCGc-- -3'
miRNA:   3'- caGCGCGuuCGCGUG-CCAGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 23360 0.68 0.599655
Target:  5'- --gGCGUgAAGCGCGCGGcggcgaaggcCCGCAACGu -3'
miRNA:   3'- cagCGCG-UUCGCGUGCCa---------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 23690 0.7 0.443627
Target:  5'- --gGCGCGugugggucuaccGGCGCACGGUCgaccaCGCGGCGa -3'
miRNA:   3'- cagCGCGU------------UCGCGUGCCAG-----GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 24729 0.67 0.621469
Target:  5'- aUCGCGCuGGCGCGCGcGaUCgGCGuGCGg -3'
miRNA:   3'- cAGCGCGuUCGCGUGC-C-AGgUGU-UGU- -5'
24033 5' -55.9 NC_005262.1 + 25334 0.67 0.632394
Target:  5'- --gGCGCAGgagccggcguuGCGCGCGGUUCgggcggaaggGCAGCAc -3'
miRNA:   3'- cagCGCGUU-----------CGCGUGCCAGG----------UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 25629 0.71 0.424491
Target:  5'- aUCGUGCcgccGCGCACGGacgUCGCGACGc -3'
miRNA:   3'- cAGCGCGuu--CGCGUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 25742 0.73 0.327093
Target:  5'- aUCGCGCAGGCcggcaagccgcuCACGGcCCGCGACu -3'
miRNA:   3'- cAGCGCGUUCGc-----------GUGCCaGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 26578 0.67 0.642228
Target:  5'- uUCGCGCAGGCauacGCugGcggccucaucaacGUCCGCAAg- -3'
miRNA:   3'- cAGCGCGUUCG----CGugC-------------CAGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 27068 0.66 0.686818
Target:  5'- -aCGCGUucGUGCGCGaGcUCgGCGACAu -3'
miRNA:   3'- caGCGCGuuCGCGUGC-C-AGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 27147 0.67 0.621469
Target:  5'- cUCGCGCAcgaacgcguAGCGCGugaGGUCgAUGGCGg -3'
miRNA:   3'- cAGCGCGU---------UCGCGUg--CCAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28168 0.71 0.41511
Target:  5'- --gGCGCAAcuGCGCGCGGcggCCGuCGACAa -3'
miRNA:   3'- cagCGCGUU--CGCGUGCCa--GGU-GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28423 0.67 0.66513
Target:  5'- -gCGCuGCAcGCGCACGGgcaUCCGgAACc -3'
miRNA:   3'- caGCG-CGUuCGCGUGCC---AGGUgUUGu -5'
24033 5' -55.9 NC_005262.1 + 28551 0.66 0.686818
Target:  5'- aUCGCGCAGugcauGCGCAUcaUCgGCGACAc -3'
miRNA:   3'- cAGCGCGUU-----CGCGUGccAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28813 0.69 0.50376
Target:  5'- --gGCGUccGGGCGCGCGGcCuCGCGGCGg -3'
miRNA:   3'- cagCGCG--UUCGCGUGCCaG-GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28885 0.69 0.53513
Target:  5'- -aUGCGCGGGCGCGaGGUCacgguCGACGu -3'
miRNA:   3'- caGCGCGUUCGCGUgCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 29745 0.66 0.686818
Target:  5'- -cUGCGCGGGCGCggGCGGcaugCCGCucGCu -3'
miRNA:   3'- caGCGCGUUCGCG--UGCCa---GGUGu-UGu -5'
24033 5' -55.9 NC_005262.1 + 31149 0.66 0.707231
Target:  5'- gGUCG-GCGAGCGCGucggcguCGGUCagcacCAGCAg -3'
miRNA:   3'- -CAGCgCGUUCGCGU-------GCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 31748 1.08 0.001145
Target:  5'- uGUCGCGCAAGCGCACGGUCCACAACAu -3'
miRNA:   3'- -CAGCGCGUUCGCGUGCCAGGUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.