miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 63355 0.66 0.729486
Target:  5'- cGUCaaGCAGGCG-GCGGcugCCACGAUg -3'
miRNA:   3'- -CAGcgCGUUCGCgUGCCa--GGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 62718 0.73 0.320804
Target:  5'- aUCGCGCAcgcacccugaucGGCGCgcugGCGGUcagcgCCGCAGCAu -3'
miRNA:   3'- cAGCGCGU------------UCGCG----UGCCA-----GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 60911 0.66 0.729486
Target:  5'- aUCGCGUAggccGGCGCAaacUCUGCGACAg -3'
miRNA:   3'- cAGCGCGU----UCGCGUgccAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 59391 0.67 0.610553
Target:  5'- cUCGCGCAgcaGGCGCGCGacaUCGCAcgcGCAa -3'
miRNA:   3'- cAGCGCGU---UCGCGUGCca-GGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 59005 0.69 0.513091
Target:  5'- cGUCGCGCuucgaccgucugcAAGC-CGCGGUgCAgGACAa -3'
miRNA:   3'- -CAGCGCG-------------UUCGcGUGCCAgGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 58784 0.76 0.202796
Target:  5'- -cCGCGUuccGGCGCugGGUCgACGACGu -3'
miRNA:   3'- caGCGCGu--UCGCGugCCAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 58448 0.66 0.718935
Target:  5'- -aCGCcccgGCAGGCGUgcGCGGcgUCACGACGu -3'
miRNA:   3'- caGCG----CGUUCGCG--UGCCa-GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 57767 0.66 0.675994
Target:  5'- -gCGCGCAauGGCGUGCuGGUUgGCgAGCAg -3'
miRNA:   3'- caGCGCGU--UCGCGUG-CCAGgUG-UUGU- -5'
24033 5' -55.9 NC_005262.1 + 57682 0.68 0.577951
Target:  5'- cUCGCGCGccgGGCGCGgcaaggugcuuuCGGUaggccgCCACGACGc -3'
miRNA:   3'- cAGCGCGU---UCGCGU------------GCCA------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 57275 0.69 0.493479
Target:  5'- cUCGCGC-AGCuCACGGcCCGCGuGCAg -3'
miRNA:   3'- cAGCGCGuUCGcGUGCCaGGUGU-UGU- -5'
24033 5' -55.9 NC_005262.1 + 56931 0.66 0.718935
Target:  5'- -cCGCGCucgagAAGCGCACGccgaUCCGCGcggGCGa -3'
miRNA:   3'- caGCGCG-----UUCGCGUGCc---AGGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 55726 0.67 0.632394
Target:  5'- -aCGCGgccaCGAGCGCGCGG-CC-CGGCu -3'
miRNA:   3'- caGCGC----GUUCGCGUGCCaGGuGUUGu -5'
24033 5' -55.9 NC_005262.1 + 55227 0.67 0.654235
Target:  5'- cGUCGCGCAGGC-CGCGcUCaACAAUc -3'
miRNA:   3'- -CAGCGCGUUCGcGUGCcAGgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 54799 0.68 0.599655
Target:  5'- cGUCGCGCAGaagauGCGCGCGGcguuuagCCGauggauuuggacCGACAc -3'
miRNA:   3'- -CAGCGCGUU-----CGCGUGCCa------GGU------------GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 54422 0.67 0.621469
Target:  5'- cUCGCGgAGGCGCA-GG-CCGCcGCGc -3'
miRNA:   3'- cAGCGCgUUCGCGUgCCaGGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 54286 0.67 0.621469
Target:  5'- cUCGCGCGGGCGC-UGGagCACGc-- -3'
miRNA:   3'- cAGCGCGUUCGCGuGCCagGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 54032 0.66 0.708299
Target:  5'- cUCGCcuacaGCAccaucgAGCGCACGGgCgACGACGg -3'
miRNA:   3'- cAGCG-----CGU------UCGCGUGCCaGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 53811 0.71 0.405857
Target:  5'- aGUCGCGUucGAGCGcCACGG-CCuuCGACGc -3'
miRNA:   3'- -CAGCGCG--UUCGC-GUGCCaGGu-GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 53484 0.71 0.424491
Target:  5'- -cCGUGCcGGCGUuguccuugaacGCGGUCUGCGGCAg -3'
miRNA:   3'- caGCGCGuUCGCG-----------UGCCAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 52042 0.66 0.706163
Target:  5'- --aGCGCAGGCGCGCGcGagcggccUCCACcuuguccgucgugAACAg -3'
miRNA:   3'- cagCGCGUUCGCGUGC-C-------AGGUG-------------UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.