miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 51962 0.67 0.610553
Target:  5'- cUCGCGCGcgccuGCGCucgaaacugucCGGUUCGCAACu -3'
miRNA:   3'- cAGCGCGUu----CGCGu----------GCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 51323 0.66 0.686818
Target:  5'- --gGCGCAuccGCGCGCGGcaagaucgaaUCCGCcauGCAg -3'
miRNA:   3'- cagCGCGUu--CGCGUGCC----------AGGUGu--UGU- -5'
24033 5' -55.9 NC_005262.1 + 51162 0.66 0.708299
Target:  5'- aGUCGC-CGAGCGCGCagcaGGcagCCgACGACGc -3'
miRNA:   3'- -CAGCGcGUUCGCGUG----CCa--GG-UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50495 0.66 0.708299
Target:  5'- cUCGCGCuccgcGGCGCugaucgccgcGCGGUUCGCGu-- -3'
miRNA:   3'- cAGCGCGu----UCGCG----------UGCCAGGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 50454 0.67 0.64332
Target:  5'- -cCGCGCGAGgaggacggcCGCACGGUauuCGACAu -3'
miRNA:   3'- caGCGCGUUC---------GCGUGCCAgguGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50429 0.68 0.599655
Target:  5'- gGUCGuCGCGGGCGCuucGUCCugcGCGGCGg -3'
miRNA:   3'- -CAGC-GCGUUCGCGugcCAGG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50251 0.68 0.56716
Target:  5'- uUCGUcaGguAGCGCagGCGGUCgCGCAGCu -3'
miRNA:   3'- cAGCG--CguUCGCG--UGCCAG-GUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 50177 0.71 0.387746
Target:  5'- uUCGCGC-GGCGCGgguuCGGUCggCGCAGCGg -3'
miRNA:   3'- cAGCGCGuUCGCGU----GCCAG--GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 49235 0.77 0.168146
Target:  5'- -gCGCGCAGuccGCGCGCgaGGUCCGCGACc -3'
miRNA:   3'- caGCGCGUU---CGCGUG--CCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 49160 0.74 0.276532
Target:  5'- -gCGUGCAGGcCGCAuCGG-CCGCAGCGg -3'
miRNA:   3'- caGCGCGUUC-GCGU-GCCaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48947 0.75 0.249816
Target:  5'- aGUUGCGCGggguGCGUccaGCGGUCgACAGCAu -3'
miRNA:   3'- -CAGCGCGUu---CGCG---UGCCAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48172 0.71 0.396735
Target:  5'- aUCGCGCGucGGCGCcggGCGGcucgUCGCGGCAg -3'
miRNA:   3'- cAGCGCGU--UCGCG---UGCCa---GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48050 0.7 0.443627
Target:  5'- -gCGCccGCAAGCGCGuCGGUcgcaccugCCGCGACGa -3'
miRNA:   3'- caGCG--CGUUCGCGU-GCCA--------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 47257 0.66 0.726331
Target:  5'- -gCGCcaGCAGGCGCaggacaaggcgaaaACGGacgCCGCGGCGa -3'
miRNA:   3'- caGCG--CGUUCGCG--------------UGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 46904 0.68 0.577951
Target:  5'- cUCG-GCGAGCGCGCGGgCCu--GCAc -3'
miRNA:   3'- cAGCgCGUUCGCGUGCCaGGuguUGU- -5'
24033 5' -55.9 NC_005262.1 + 46646 0.67 0.64332
Target:  5'- gGUCGuCGUggGCGuCGCGGgagCgGCGGCc -3'
miRNA:   3'- -CAGC-GCGuuCGC-GUGCCa--GgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 46409 0.66 0.718935
Target:  5'- cGUCGgGCuGGGCccGCAaGGUCCGCAGgGg -3'
miRNA:   3'- -CAGCgCG-UUCG--CGUgCCAGGUGUUgU- -5'
24033 5' -55.9 NC_005262.1 + 45924 0.66 0.723166
Target:  5'- cUCGUgaucggcaucaucaGCGAGCGCaugcagcacgaguaGCGGUCCugGAUc -3'
miRNA:   3'- cAGCG--------------CGUUCGCG--------------UGCCAGGugUUGu -5'
24033 5' -55.9 NC_005262.1 + 45661 0.67 0.66513
Target:  5'- cGUCGaacagauCGAGCGCAUGGUgCCGCAc-- -3'
miRNA:   3'- -CAGCgc-----GUUCGCGUGCCA-GGUGUugu -5'
24033 5' -55.9 NC_005262.1 + 45220 0.83 0.070687
Target:  5'- uGUCGCGCAcguucuGGCGCGCGGUguUCGCGGCAc -3'
miRNA:   3'- -CAGCGCGU------UCGCGUGCCA--GGUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.