miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 44229 0.67 0.64332
Target:  5'- aUCGCGCGcGCGUcCGG-CCGgAACGc -3'
miRNA:   3'- cAGCGCGUuCGCGuGCCaGGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 44021 0.67 0.653144
Target:  5'- cGUCGCGC-AGCGUguuguagucggccGCGGUUgGCGccGCGc -3'
miRNA:   3'- -CAGCGCGuUCGCG-------------UGCCAGgUGU--UGU- -5'
24033 5' -55.9 NC_005262.1 + 42760 0.68 0.56716
Target:  5'- -gCGUGCGGGCGcCACGGcUCGCAGa- -3'
miRNA:   3'- caGCGCGUUCGC-GUGCCaGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 42737 0.7 0.463238
Target:  5'- cGUCGCGCucGGCGCcuACGG--CACGACGa -3'
miRNA:   3'- -CAGCGCGu-UCGCG--UGCCagGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 42071 0.7 0.483295
Target:  5'- cGUCGCGUucuGCGCGgCGGUgUcagGCAACAg -3'
miRNA:   3'- -CAGCGCGuu-CGCGU-GCCAgG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 40590 0.71 0.433998
Target:  5'- cGUCGCGCugacgguGGCGCAgaugCCGCAGCAu -3'
miRNA:   3'- -CAGCGCGu------UCGCGUgccaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 38027 0.67 0.64332
Target:  5'- --gGCGUuGGCGuCGCGGUCCAUg--- -3'
miRNA:   3'- cagCGCGuUCGC-GUGCCAGGUGuugu -5'
24033 5' -55.9 NC_005262.1 + 37922 0.72 0.378892
Target:  5'- aUCGCGUGGacgauuggcGCGCAUGGaCCGCGACGc -3'
miRNA:   3'- cAGCGCGUU---------CGCGUGCCaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 37902 0.66 0.686818
Target:  5'- cUCGCGCAguacacGGCGgGCacGUUCGCGACGu -3'
miRNA:   3'- cAGCGCGU------UCGCgUGc-CAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 36277 0.69 0.493479
Target:  5'- -aUGCGUggGCGCGCGGcgaCGCgAACAc -3'
miRNA:   3'- caGCGCGuuCGCGUGCCag-GUG-UUGU- -5'
24033 5' -55.9 NC_005262.1 + 33872 0.67 0.610553
Target:  5'- -cCGCGCGAGCGaugaGGUCgguaGCGGCGa -3'
miRNA:   3'- caGCGCGUUCGCgug-CCAGg---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 32648 0.68 0.599655
Target:  5'- aUUGCGCGGGCGaucaGGUCUGCGAa- -3'
miRNA:   3'- cAGCGCGUUCGCgug-CCAGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 31748 1.08 0.001145
Target:  5'- uGUCGCGCAAGCGCACGGUCCACAACAu -3'
miRNA:   3'- -CAGCGCGUUCGCGUGCCAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 31149 0.66 0.707231
Target:  5'- gGUCG-GCGAGCGCGucggcguCGGUCagcacCAGCAg -3'
miRNA:   3'- -CAGCgCGUUCGCGU-------GCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 29745 0.66 0.686818
Target:  5'- -cUGCGCGGGCGCggGCGGcaugCCGCucGCu -3'
miRNA:   3'- caGCGCGUUCGCG--UGCCa---GGUGu-UGu -5'
24033 5' -55.9 NC_005262.1 + 28885 0.69 0.53513
Target:  5'- -aUGCGCGGGCGCGaGGUCacgguCGACGu -3'
miRNA:   3'- caGCGCGUUCGCGUgCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28813 0.69 0.50376
Target:  5'- --gGCGUccGGGCGCGCGGcCuCGCGGCGg -3'
miRNA:   3'- cagCGCG--UUCGCGUGCCaG-GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28551 0.66 0.686818
Target:  5'- aUCGCGCAGugcauGCGCAUcaUCgGCGACAc -3'
miRNA:   3'- cAGCGCGUU-----CGCGUGccAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28423 0.67 0.66513
Target:  5'- -gCGCuGCAcGCGCACGGgcaUCCGgAACc -3'
miRNA:   3'- caGCG-CGUuCGCGUGCC---AGGUgUUGu -5'
24033 5' -55.9 NC_005262.1 + 28168 0.71 0.41511
Target:  5'- --gGCGCAAcuGCGCGCGGcggCCGuCGACAa -3'
miRNA:   3'- cagCGCGUU--CGCGUGCCa--GGU-GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.