miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 15310 0.69 0.514133
Target:  5'- -cCGCGCAugGGCGgGCGG-CCgucgaGCAACAg -3'
miRNA:   3'- caGCGCGU--UCGCgUGCCaGG-----UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28168 0.71 0.41511
Target:  5'- --gGCGCAAcuGCGCGCGGcggCCGuCGACAa -3'
miRNA:   3'- cagCGCGUU--CGCGUGCCa--GGU-GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 40590 0.71 0.433998
Target:  5'- cGUCGCGCugacgguGGCGCAgaugCCGCAGCAu -3'
miRNA:   3'- -CAGCGCGu------UCGCGUgccaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48050 0.7 0.443627
Target:  5'- -gCGCccGCAAGCGCGuCGGUcgcaccugCCGCGACGa -3'
miRNA:   3'- caGCG--CGUUCGCGU-GCCA--------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 23690 0.7 0.443627
Target:  5'- --gGCGCGugugggucuaccGGCGCACGGUCgaccaCGCGGCGa -3'
miRNA:   3'- cagCGCGU------------UCGCGUGCCAG-----GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 42737 0.7 0.463238
Target:  5'- cGUCGCGCucGGCGCcuACGG--CACGACGa -3'
miRNA:   3'- -CAGCGCGu-UCGCG--UGCCagGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 57275 0.69 0.493479
Target:  5'- cUCGCGC-AGCuCACGGcCCGCGuGCAg -3'
miRNA:   3'- cAGCGCGuUCGcGUGCCaGGUGU-UGU- -5'
24033 5' -55.9 NC_005262.1 + 36277 0.69 0.493479
Target:  5'- -aUGCGUggGCGCGCGGcgaCGCgAACAc -3'
miRNA:   3'- caGCGCGuuCGCGUGCCag-GUG-UUGU- -5'
24033 5' -55.9 NC_005262.1 + 59005 0.69 0.513091
Target:  5'- cGUCGCGCuucgaccgucugcAAGC-CGCGGUgCAgGACAa -3'
miRNA:   3'- -CAGCGCG-------------UUCGcGUGCCAgGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 18295 0.71 0.396735
Target:  5'- uUCGgGUAGGCGCGcCGGUUCGCuucGCGg -3'
miRNA:   3'- cAGCgCGUUCGCGU-GCCAGGUGu--UGU- -5'
24033 5' -55.9 NC_005262.1 + 37922 0.72 0.378892
Target:  5'- aUCGCGUGGacgauuggcGCGCAUGGaCCGCGACGc -3'
miRNA:   3'- cAGCGCGUU---------CGCGUGCCaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 10779 0.72 0.370174
Target:  5'- -cCGCGcCGGGCGCGCGGUaCUGCuGCGc -3'
miRNA:   3'- caGCGC-GUUCGCGUGCCA-GGUGuUGU- -5'
24033 5' -55.9 NC_005262.1 + 49235 0.77 0.168146
Target:  5'- -gCGCGCAGuccGCGCGCgaGGUCCGCGACc -3'
miRNA:   3'- caGCGCGUU---CGCGUG--CCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 58784 0.76 0.202796
Target:  5'- -cCGCGUuccGGCGCugGGUCgACGACGu -3'
miRNA:   3'- caGCGCGu--UCGCGugCCAGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 49160 0.74 0.276532
Target:  5'- -gCGUGCAGGcCGCAuCGG-CCGCAGCGg -3'
miRNA:   3'- caGCGCGUUC-GCGU-GCCaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 12329 0.74 0.276532
Target:  5'- cUCGUGCcgcAGCGCGCGG-CgGCAGCAu -3'
miRNA:   3'- cAGCGCGu--UCGCGUGCCaGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11030 0.74 0.290001
Target:  5'- uGUCGCGCAAgaccGCGCGCagcaacaGG-CCGCAGCGu -3'
miRNA:   3'- -CAGCGCGUU----CGCGUG-------CCaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 62718 0.73 0.320804
Target:  5'- aUCGCGCAcgcacccugaucGGCGCgcugGCGGUcagcgCCGCAGCAu -3'
miRNA:   3'- cAGCGCGU------------UCGCG----UGCCA-----GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 25742 0.73 0.327093
Target:  5'- aUCGCGCAGGCcggcaagccgcuCACGGcCCGCGACu -3'
miRNA:   3'- cAGCGCGUUCGc-----------GUGCCaGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 17333 0.72 0.370174
Target:  5'- --aGCGCGAGCGCgucGCGGcgaUCCGCGAgAa -3'
miRNA:   3'- cagCGCGUUCGCG---UGCC---AGGUGUUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.