miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 49235 0.77 0.168146
Target:  5'- -gCGCGCAGuccGCGCGCgaGGUCCGCGACc -3'
miRNA:   3'- caGCGCGUU---CGCGUG--CCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 31748 1.08 0.001145
Target:  5'- uGUCGCGCAAGCGCACGGUCCACAACAu -3'
miRNA:   3'- -CAGCGCGUUCGCGUGCCAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 28168 0.71 0.41511
Target:  5'- --gGCGCAAcuGCGCGCGGcggCCGuCGACAa -3'
miRNA:   3'- cagCGCGUU--CGCGUGCCa--GGU-GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 40590 0.71 0.433998
Target:  5'- cGUCGCGCugacgguGGCGCAgaugCCGCAGCAu -3'
miRNA:   3'- -CAGCGCGu------UCGCGUgccaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48050 0.7 0.443627
Target:  5'- -gCGCccGCAAGCGCGuCGGUcgcaccugCCGCGACGa -3'
miRNA:   3'- caGCG--CGUUCGCGU-GCCA--------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 23360 0.68 0.599655
Target:  5'- --gGCGUgAAGCGCGCGGcggcgaaggcCCGCAACGu -3'
miRNA:   3'- cagCGCG-UUCGCGUGCCa---------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 16729 0.68 0.599655
Target:  5'- -gUGCGCAccgGGCaGCACGgGUCUGCGAUg -3'
miRNA:   3'- caGCGCGU---UCG-CGUGC-CAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 11384 0.68 0.588785
Target:  5'- -aCGaCGUucGCGCGCGGcUCCACGcCGa -3'
miRNA:   3'- caGC-GCGuuCGCGUGCC-AGGUGUuGU- -5'
24033 5' -55.9 NC_005262.1 + 57682 0.68 0.577951
Target:  5'- cUCGCGCGccgGGCGCGgcaaggugcuuuCGGUaggccgCCACGACGc -3'
miRNA:   3'- cAGCGCGU---UCGCGU------------GCCA------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11947 0.68 0.577951
Target:  5'- aUgGCGCAcGCGCugGGgaUCgACGGCGa -3'
miRNA:   3'- cAgCGCGUuCGCGugCC--AGgUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 17547 0.68 0.56716
Target:  5'- gGUCGCGC--GCGagGCGGcagCCGCGGCGg -3'
miRNA:   3'- -CAGCGCGuuCGCg-UGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 15310 0.69 0.514133
Target:  5'- -cCGCGCAugGGCGgGCGG-CCgucgaGCAACAg -3'
miRNA:   3'- caGCGCGU--UCGCgUGCCaGG-----UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 23690 0.7 0.443627
Target:  5'- --gGCGCGugugggucuaccGGCGCACGGUCgaccaCGCGGCGa -3'
miRNA:   3'- cagCGCGU------------UCGCGUGCCAG-----GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 42737 0.7 0.463238
Target:  5'- cGUCGCGCucGGCGCcuACGG--CACGACGa -3'
miRNA:   3'- -CAGCGCGu-UCGCG--UGCCagGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 57275 0.69 0.493479
Target:  5'- cUCGCGC-AGCuCACGGcCCGCGuGCAg -3'
miRNA:   3'- cAGCGCGuUCGcGUGCCaGGUGU-UGU- -5'
24033 5' -55.9 NC_005262.1 + 36277 0.69 0.493479
Target:  5'- -aUGCGUggGCGCGCGGcgaCGCgAACAc -3'
miRNA:   3'- caGCGCGuuCGCGUGCCag-GUG-UUGU- -5'
24033 5' -55.9 NC_005262.1 + 59005 0.69 0.513091
Target:  5'- cGUCGCGCuucgaccgucugcAAGC-CGCGGUgCAgGACAa -3'
miRNA:   3'- -CAGCGCG-------------UUCGcGUGCCAgGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 45220 0.83 0.070687
Target:  5'- uGUCGCGCAcguucuGGCGCGCGGUguUCGCGGCAc -3'
miRNA:   3'- -CAGCGCGU------UCGCGUGCCA--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 60911 0.66 0.729486
Target:  5'- aUCGCGUAggccGGCGCAaacUCUGCGACAg -3'
miRNA:   3'- cAGCGCGU----UCGCGUgccAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 63355 0.66 0.729486
Target:  5'- cGUCaaGCAGGCG-GCGGcugCCACGAUg -3'
miRNA:   3'- -CAGcgCGUUCGCgUGCCa--GGUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.