miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 17259 0.66 0.729486
Target:  5'- gGUCGCGUccucGCGCGCGG-CCuugcCGGCc -3'
miRNA:   3'- -CAGCGCGuu--CGCGUGCCaGGu---GUUGu -5'
24033 5' -55.9 NC_005262.1 + 18498 0.67 0.66513
Target:  5'- aGUCGCGCucauugAGGCGCuCGGaagCCGguGCGg -3'
miRNA:   3'- -CAGCGCG------UUCGCGuGCCa--GGUguUGU- -5'
24033 5' -55.9 NC_005262.1 + 10905 0.67 0.654235
Target:  5'- -aCGCGCAuGCGC-UGGUCgugaucguCGCGGCAg -3'
miRNA:   3'- caGCGCGUuCGCGuGCCAG--------GUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 45220 0.83 0.070687
Target:  5'- uGUCGCGCAcguucuGGCGCGCGGUguUCGCGGCAc -3'
miRNA:   3'- -CAGCGCGU------UCGCGUGCCA--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 45924 0.66 0.723166
Target:  5'- cUCGUgaucggcaucaucaGCGAGCGCaugcagcacgaguaGCGGUCCugGAUc -3'
miRNA:   3'- cAGCG--------------CGUUCGCG--------------UGCCAGGugUUGu -5'
24033 5' -55.9 NC_005262.1 + 12965 0.66 0.708299
Target:  5'- -aUGCGCAcgAGCGuCACcGUgCACGGCAg -3'
miRNA:   3'- caGCGCGU--UCGC-GUGcCAgGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 6820 0.66 0.708299
Target:  5'- -gCGCGCGAGauguucgacaaGCACGGgCC-CGGCAu -3'
miRNA:   3'- caGCGCGUUCg----------CGUGCCaGGuGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 31149 0.66 0.707231
Target:  5'- gGUCG-GCGAGCGCGucggcguCGGUCagcacCAGCAg -3'
miRNA:   3'- -CAGCgCGUUCGCGU-------GCCAGgu---GUUGU- -5'
24033 5' -55.9 NC_005262.1 + 9603 0.66 0.69759
Target:  5'- -cCGCGCAuauugaaaAGCGguCGGgCCGCAAa- -3'
miRNA:   3'- caGCGCGU--------UCGCguGCCaGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 10805 0.66 0.675994
Target:  5'- uUUGCGgGAGCGC-CGG-CCGCGugcGCGc -3'
miRNA:   3'- cAGCGCgUUCGCGuGCCaGGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 29745 0.66 0.686818
Target:  5'- -cUGCGCGGGCGCggGCGGcaugCCGCucGCu -3'
miRNA:   3'- caGCGCGUUCGCG--UGCCa---GGUGu-UGu -5'
24033 5' -55.9 NC_005262.1 + 52042 0.66 0.706163
Target:  5'- --aGCGCAGGCGCGCGcGagcggccUCCACcuuguccgucgugAACAg -3'
miRNA:   3'- cagCGCGUUCGCGUGC-C-------AGGUG-------------UUGU- -5'
24033 5' -55.9 NC_005262.1 + 60911 0.66 0.729486
Target:  5'- aUCGCGUAggccGGCGCAaacUCUGCGACAg -3'
miRNA:   3'- cAGCGCGU----UCGCGUgccAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 37902 0.66 0.686818
Target:  5'- cUCGCGCAguacacGGCGgGCacGUUCGCGACGu -3'
miRNA:   3'- cAGCGCGU------UCGCgUGc-CAGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 63355 0.66 0.729486
Target:  5'- cGUCaaGCAGGCG-GCGGcugCCACGAUg -3'
miRNA:   3'- -CAGcgCGUUCGCgUGCCa--GGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 1248 0.66 0.706163
Target:  5'- -cCGCGCAGGauggcaagccCGCGCGGcagcaucgaagcCCGCAGCGg -3'
miRNA:   3'- caGCGCGUUC----------GCGUGCCa-----------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 20596 0.66 0.685737
Target:  5'- gGUCGuCGCGAGCGCcgcgccgAUGGUgCGCG-CGa -3'
miRNA:   3'- -CAGC-GCGUUCGCG-------UGCCAgGUGUuGU- -5'
24033 5' -55.9 NC_005262.1 + 28423 0.67 0.66513
Target:  5'- -gCGCuGCAcGCGCACGGgcaUCCGgAACc -3'
miRNA:   3'- caGCG-CGUuCGCGUGCC---AGGUgUUGu -5'
24033 5' -55.9 NC_005262.1 + 16130 0.66 0.729486
Target:  5'- aGUCGCGguAGCG-GCGGUUgAUGAUc -3'
miRNA:   3'- -CAGCGCguUCGCgUGCCAGgUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 50495 0.66 0.708299
Target:  5'- cUCGCGCuccgcGGCGCugaucgccgcGCGGUUCGCGu-- -3'
miRNA:   3'- cAGCGCGu----UCGCG----------UGCCAGGUGUugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.