Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24033 | 5' | -55.9 | NC_005262.1 | + | 11075 | 0.67 | 0.64332 |
Target: 5'- -cCGUGCGAGCGCGacCGGcguUCC-CGGCGc -3' miRNA: 3'- caGCGCGUUCGCGU--GCC---AGGuGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 10905 | 0.67 | 0.654235 |
Target: 5'- -aCGCGCAuGCGC-UGGUCgugaucguCGCGGCAg -3' miRNA: 3'- caGCGCGUuCGCGuGCCAG--------GUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 52042 | 0.66 | 0.706163 |
Target: 5'- --aGCGCAGGCGCGCGcGagcggccUCCACcuuguccgucgugAACAg -3' miRNA: 3'- cagCGCGUUCGCGUGC-C-------AGGUG-------------UUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 16130 | 0.66 | 0.729486 |
Target: 5'- aGUCGCGguAGCG-GCGGUUgAUGAUc -3' miRNA: 3'- -CAGCGCguUCGCgUGCCAGgUGUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 13228 | 0.68 | 0.582279 |
Target: 5'- -cCGCGCAGcGCGCGCGGcggaccuaauugugCCACGGu- -3' miRNA: 3'- caGCGCGUU-CGCGUGCCa-------------GGUGUUgu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 1626 | 0.67 | 0.621469 |
Target: 5'- gGUCGCGCAacgcuGGCGCuguucacgcaauACGuUCCGCcGCAg -3' miRNA: 3'- -CAGCGCGU-----UCGCG------------UGCcAGGUGuUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 18498 | 0.67 | 0.66513 |
Target: 5'- aGUCGCGCucauugAGGCGCuCGGaagCCGguGCGg -3' miRNA: 3'- -CAGCGCG------UUCGCGuGCCa--GGUguUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 63355 | 0.66 | 0.729486 |
Target: 5'- cGUCaaGCAGGCG-GCGGcugCCACGAUg -3' miRNA: 3'- -CAGcgCGUUCGCgUGCCa--GGUGUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 25334 | 0.67 | 0.632394 |
Target: 5'- --gGCGCAGgagccggcguuGCGCGCGGUUCgggcggaaggGCAGCAc -3' miRNA: 3'- cagCGCGUU-----------CGCGUGCCAGG----------UGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 60911 | 0.66 | 0.729486 |
Target: 5'- aUCGCGUAggccGGCGCAaacUCUGCGACAg -3' miRNA: 3'- cAGCGCGU----UCGCGUgccAGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 28423 | 0.67 | 0.66513 |
Target: 5'- -gCGCuGCAcGCGCACGGgcaUCCGgAACc -3' miRNA: 3'- caGCG-CGUuCGCGUGCC---AGGUgUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 38027 | 0.67 | 0.64332 |
Target: 5'- --gGCGUuGGCGuCGCGGUCCAUg--- -3' miRNA: 3'- cagCGCGuUCGC-GUGCCAGGUGuugu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 37902 | 0.66 | 0.686818 |
Target: 5'- cUCGCGCAguacacGGCGgGCacGUUCGCGACGu -3' miRNA: 3'- cAGCGCGU------UCGCgUGc-CAGGUGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 9603 | 0.66 | 0.69759 |
Target: 5'- -cCGCGCAuauugaaaAGCGguCGGgCCGCAAa- -3' miRNA: 3'- caGCGCGU--------UCGCguGCCaGGUGUUgu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 6820 | 0.66 | 0.708299 |
Target: 5'- -gCGCGCGAGauguucgacaaGCACGGgCC-CGGCAu -3' miRNA: 3'- caGCGCGUUCg----------CGUGCCaGGuGUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 45924 | 0.66 | 0.723166 |
Target: 5'- cUCGUgaucggcaucaucaGCGAGCGCaugcagcacgaguaGCGGUCCugGAUc -3' miRNA: 3'- cAGCG--------------CGUUCGCG--------------UGCCAGGugUUGu -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 28885 | 0.69 | 0.53513 |
Target: 5'- -aUGCGCGGGCGCGaGGUCacgguCGACGu -3' miRNA: 3'- caGCGCGUUCGCGUgCCAGgu---GUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 46904 | 0.68 | 0.577951 |
Target: 5'- cUCG-GCGAGCGCGCGGgCCu--GCAc -3' miRNA: 3'- cAGCgCGUUCGCGUGCCaGGuguUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 11672 | 0.68 | 0.599655 |
Target: 5'- aGUCGCuCGAGCGCugGccgCCGcCGGCAu -3' miRNA: 3'- -CAGCGcGUUCGCGugCca-GGU-GUUGU- -5' |
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24033 | 5' | -55.9 | NC_005262.1 | + | 27147 | 0.67 | 0.621469 |
Target: 5'- cUCGCGCAcgaacgcguAGCGCGugaGGUCgAUGGCGg -3' miRNA: 3'- cAGCGCGU---------UCGCGUg--CCAGgUGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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