miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 5' -55.9 NC_005262.1 + 44229 0.67 0.64332
Target:  5'- aUCGCGCGcGCGUcCGG-CCGgAACGc -3'
miRNA:   3'- cAGCGCGUuCGCGuGCCaGGUgUUGU- -5'
24033 5' -55.9 NC_005262.1 + 9603 0.66 0.69759
Target:  5'- -cCGCGCAuauugaaaAGCGguCGGgCCGCAAa- -3'
miRNA:   3'- caGCGCGU--------UCGCguGCCaGGUGUUgu -5'
24033 5' -55.9 NC_005262.1 + 20596 0.66 0.685737
Target:  5'- gGUCGuCGCGAGCGCcgcgccgAUGGUgCGCG-CGa -3'
miRNA:   3'- -CAGC-GCGUUCGCG-------UGCCAgGUGUuGU- -5'
24033 5' -55.9 NC_005262.1 + 12965 0.66 0.708299
Target:  5'- -aUGCGCAcgAGCGuCACcGUgCACGGCAg -3'
miRNA:   3'- caGCGCGU--UCGC-GUGcCAgGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 45220 0.83 0.070687
Target:  5'- uGUCGCGCAcguucuGGCGCGCGGUguUCGCGGCAc -3'
miRNA:   3'- -CAGCGCGU------UCGCGUGCCA--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 48172 0.71 0.396735
Target:  5'- aUCGCGCGucGGCGCcggGCGGcucgUCGCGGCAg -3'
miRNA:   3'- cAGCGCGU--UCGCG---UGCCa---GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 25629 0.71 0.424491
Target:  5'- aUCGUGCcgccGCGCACGGacgUCGCGACGc -3'
miRNA:   3'- cAGCGCGuu--CGCGUGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 11130 0.69 0.493479
Target:  5'- -aCGCuGCGGccuguugcuGCGCGCGGUCUugcGCGACAg -3'
miRNA:   3'- caGCG-CGUU---------CGCGUGCCAGG---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 13557 0.69 0.53513
Target:  5'- -gCGCGCGAcGCGCGCGGgcUUCGCGcccuuGCGa -3'
miRNA:   3'- caGCGCGUU-CGCGUGCC--AGGUGU-----UGU- -5'
24033 5' -55.9 NC_005262.1 + 5277 0.68 0.588785
Target:  5'- gGUCGCGCcGGcCGCGCccgcGcCCGCGACGc -3'
miRNA:   3'- -CAGCGCGuUC-GCGUGc---CaGGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 33872 0.67 0.610553
Target:  5'- -cCGCGCGAGCGaugaGGUCgguaGCGGCGa -3'
miRNA:   3'- caGCGCGUUCGCgug-CCAGg---UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 50251 0.68 0.56716
Target:  5'- uUCGUcaGguAGCGCagGCGGUCgCGCAGCu -3'
miRNA:   3'- cAGCG--CguUCGCG--UGCCAG-GUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 25334 0.67 0.632394
Target:  5'- --gGCGCAGgagccggcguuGCGCGCGGUUCgggcggaaggGCAGCAc -3'
miRNA:   3'- cagCGCGUU-----------CGCGUGCCAGG----------UGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 38027 0.67 0.64332
Target:  5'- --gGCGUuGGCGuCGCGGUCCAUg--- -3'
miRNA:   3'- cagCGCGuUCGC-GUGCCAGGUGuugu -5'
24033 5' -55.9 NC_005262.1 + 28423 0.67 0.66513
Target:  5'- -gCGCuGCAcGCGCACGGgcaUCCGgAACc -3'
miRNA:   3'- caGCG-CGUuCGCGUGCC---AGGUgUUGu -5'
24033 5' -55.9 NC_005262.1 + 47257 0.66 0.726331
Target:  5'- -gCGCcaGCAGGCGCaggacaaggcgaaaACGGacgCCGCGGCGa -3'
miRNA:   3'- caGCG--CGUUCGCG--------------UGCCa--GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 56931 0.66 0.718935
Target:  5'- -cCGCGCucgagAAGCGCACGccgaUCCGCGcggGCGa -3'
miRNA:   3'- caGCGCG-----UUCGCGUGCc---AGGUGU---UGU- -5'
24033 5' -55.9 NC_005262.1 + 48050 0.7 0.443627
Target:  5'- -gCGCccGCAAGCGCGuCGGUcgcaccugCCGCGACGa -3'
miRNA:   3'- caGCG--CGUUCGCGU-GCCA--------GGUGUUGU- -5'
24033 5' -55.9 NC_005262.1 + 51962 0.67 0.610553
Target:  5'- cUCGCGCGcgccuGCGCucgaaacugucCGGUUCGCAACu -3'
miRNA:   3'- cAGCGCGUu----CGCGu----------GCCAGGUGUUGu -5'
24033 5' -55.9 NC_005262.1 + 59391 0.67 0.610553
Target:  5'- cUCGCGCAgcaGGCGCGCGacaUCGCAcgcGCAa -3'
miRNA:   3'- cAGCGCGU---UCGCGUGCca-GGUGU---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.