miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24034 3' -60 NC_005262.1 + 25906 0.66 0.570623
Target:  5'- uGC-CGagcaGCGCGCaUGGuACGUCG-CCACg -3'
miRNA:   3'- gCGaGC----UGCGCG-GCC-UGCAGCuGGUG- -5'
24034 3' -60 NC_005262.1 + 26894 0.66 0.570623
Target:  5'- gGC-CGGCGCGuCCGu-UGUCGAUCAUn -3'
miRNA:   3'- gCGaGCUGCGC-GGCcuGCAGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 46166 0.66 0.570623
Target:  5'- aCGCgaucucCGACGCGaCGGcCGaggCGAUCACg -3'
miRNA:   3'- -GCGa-----GCUGCGCgGCCuGCa--GCUGGUG- -5'
24034 3' -60 NC_005262.1 + 56617 0.66 0.570623
Target:  5'- uGCUCGACGgaUGCCGGgaaccACGgcgCGuCCAg -3'
miRNA:   3'- gCGAGCUGC--GCGGCC-----UGCa--GCuGGUg -5'
24034 3' -60 NC_005262.1 + 11478 0.66 0.570623
Target:  5'- gGCuUCGGCGUggaGCCGcGcgcgaACGUCGugCGCu -3'
miRNA:   3'- gCG-AGCUGCG---CGGC-C-----UGCAGCugGUG- -5'
24034 3' -60 NC_005262.1 + 29261 0.66 0.570623
Target:  5'- aGCUCGGCGacggcCGCCuGACGcauggUCGcgcGCCACu -3'
miRNA:   3'- gCGAGCUGC-----GCGGcCUGC-----AGC---UGGUG- -5'
24034 3' -60 NC_005262.1 + 50331 0.66 0.568567
Target:  5'- gCGCcCGcCGCGCaGGACGaagcgcccgcgaCGACCGCg -3'
miRNA:   3'- -GCGaGCuGCGCGgCCUGCa-----------GCUGGUG- -5'
24034 3' -60 NC_005262.1 + 12889 0.66 0.56754
Target:  5'- aCGCUCGuGCGCaucagccccggccuGCUGGACGaCGACaACc -3'
miRNA:   3'- -GCGAGC-UGCG--------------CGGCCUGCaGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 5981 0.66 0.560364
Target:  5'- gCGCUCc-CGC-CCGacaucGACGUCGAUCGCu -3'
miRNA:   3'- -GCGAGcuGCGcGGC-----CUGCAGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 34160 0.66 0.560364
Target:  5'- gCGCgcgCGGCGUGCCaguccggguucuGGuCGUCGAgCAa -3'
miRNA:   3'- -GCGa--GCUGCGCGG------------CCuGCAGCUgGUg -5'
24034 3' -60 NC_005262.1 + 46001 0.66 0.560364
Target:  5'- uGUUCGcguuccugcACGCGCaaGGCGUCGcgcuGCCGCg -3'
miRNA:   3'- gCGAGC---------UGCGCGgcCUGCAGC----UGGUG- -5'
24034 3' -60 NC_005262.1 + 57252 0.66 0.560364
Target:  5'- aGCggCGAgGgguCGCCGGGgaUGUCGACCGa -3'
miRNA:   3'- gCGa-GCUgC---GCGGCCU--GCAGCUGGUg -5'
24034 3' -60 NC_005262.1 + 55753 0.66 0.560364
Target:  5'- aCGUUCGACGCGUgGGccaaccaGUaCGGCgACa -3'
miRNA:   3'- -GCGAGCUGCGCGgCCug-----CA-GCUGgUG- -5'
24034 3' -60 NC_005262.1 + 33563 0.66 0.560364
Target:  5'- uGCUCGACGagcucgagGCCGG-CGa-GAUCACg -3'
miRNA:   3'- gCGAGCUGCg-------CGGCCuGCagCUGGUG- -5'
24034 3' -60 NC_005262.1 + 47237 0.66 0.560364
Target:  5'- uGCgCGcCuCGCCGGucGCGUCGACCu- -3'
miRNA:   3'- gCGaGCuGcGCGGCC--UGCAGCUGGug -5'
24034 3' -60 NC_005262.1 + 23929 0.66 0.560364
Target:  5'- gGCaagggCGGCGUGCCGGccuACGUUG-CCGa -3'
miRNA:   3'- gCGa----GCUGCGCGGCC---UGCAGCuGGUg -5'
24034 3' -60 NC_005262.1 + 24479 0.66 0.559341
Target:  5'- uCGCggaCGuGCGCGCCGccgguuuGGCGUCGACa-- -3'
miRNA:   3'- -GCGa--GC-UGCGCGGC-------CUGCAGCUGgug -5'
24034 3' -60 NC_005262.1 + 34007 0.66 0.550156
Target:  5'- gCGCggaCGGCGUgacGCCGGGCcgcaUCGugCGCc -3'
miRNA:   3'- -GCGa--GCUGCG---CGGCCUGc---AGCugGUG- -5'
24034 3' -60 NC_005262.1 + 44125 0.66 0.550156
Target:  5'- gCGCaUCGGCGUucccgcguuccgGCCGGACGcgcgcgCGAUCGg -3'
miRNA:   3'- -GCG-AGCUGCG------------CGGCCUGCa-----GCUGGUg -5'
24034 3' -60 NC_005262.1 + 54041 0.66 0.550156
Target:  5'- aGCaccaUCGA-GCGCaCGGGCGaCGACgGCa -3'
miRNA:   3'- gCG----AGCUgCGCG-GCCUGCaGCUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.