miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24034 3' -60 NC_005262.1 + 32681 0.66 0.540007
Target:  5'- aGUUCG-CGCuGCCGGcCGcCGGCCu- -3'
miRNA:   3'- gCGAGCuGCG-CGGCCuGCaGCUGGug -5'
24034 3' -60 NC_005262.1 + 31577 0.66 0.529921
Target:  5'- aGCUCGAaucCGaCGCCGG-CGaUCGcAUCACc -3'
miRNA:   3'- gCGAGCU---GC-GCGGCCuGC-AGC-UGGUG- -5'
24034 3' -60 NC_005262.1 + 57200 0.66 0.550156
Target:  5'- cCGCUCGAC---CCGGACcugccgGUCGGCgGCa -3'
miRNA:   3'- -GCGAGCUGcgcGGCCUG------CAGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 54041 0.66 0.550156
Target:  5'- aGCaccaUCGA-GCGCaCGGGCGaCGACgGCa -3'
miRNA:   3'- gCG----AGCUgCGCG-GCCUGCaGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 45229 0.66 0.550156
Target:  5'- gGCUCGGCcugaaCGCCGGcaacuCGgCGACCGg -3'
miRNA:   3'- gCGAGCUGc----GCGGCCu----GCaGCUGGUg -5'
24034 3' -60 NC_005262.1 + 49784 0.66 0.544059
Target:  5'- cCGCU-GcCGCGCCGGAcgccccugcaccgucCGgcccgaUCGGCCGCg -3'
miRNA:   3'- -GCGAgCuGCGCGGCCU---------------GC------AGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 60508 0.66 0.528916
Target:  5'- cCGCgCGGCGCagGCCGccaagagcguGACGgucgacuUCGACCGCa -3'
miRNA:   3'- -GCGaGCUGCG--CGGC----------CUGC-------AGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 44125 0.66 0.550156
Target:  5'- gCGCaUCGGCGUucccgcguuccgGCCGGACGcgcgcgCGAUCGg -3'
miRNA:   3'- -GCG-AGCUGCG------------CGGCCUGCa-----GCUGGUg -5'
24034 3' -60 NC_005262.1 + 53328 0.66 0.540007
Target:  5'- aGCgacCGcGCGCGCCGcuaccuCGcCGACCGCg -3'
miRNA:   3'- gCGa--GC-UGCGCGGCcu----GCaGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 59125 0.66 0.540007
Target:  5'- gCGC-CGAgGCgaaccgGCCGGgccGCGUCG-CCGCg -3'
miRNA:   3'- -GCGaGCUgCG------CGGCC---UGCAGCuGGUG- -5'
24034 3' -60 NC_005262.1 + 61718 0.66 0.529921
Target:  5'- uCGCUCGGCGCGCUcugcuuACuUCG-CCGCg -3'
miRNA:   3'- -GCGAGCUGCGCGGcc----UGcAGCuGGUG- -5'
24034 3' -60 NC_005262.1 + 42741 0.66 0.519905
Target:  5'- gCGCUCGGCGCcuaCGGcACGaCGAUCGu -3'
miRNA:   3'- -GCGAGCUGCGcg-GCC-UGCaGCUGGUg -5'
24034 3' -60 NC_005262.1 + 24732 0.66 0.529921
Target:  5'- gCGCU-GGCGCGCgCGaucGGCGUgCGGCCGa -3'
miRNA:   3'- -GCGAgCUGCGCG-GC---CUGCA-GCUGGUg -5'
24034 3' -60 NC_005262.1 + 17416 0.66 0.529921
Target:  5'- aCGCUgGGCGCcacGCUGGACGaccugcgcucguUCGAgaUCACg -3'
miRNA:   3'- -GCGAgCUGCG---CGGCCUGC------------AGCU--GGUG- -5'
24034 3' -60 NC_005262.1 + 34007 0.66 0.550156
Target:  5'- gCGCggaCGGCGUgacGCCGGGCcgcaUCGugCGCc -3'
miRNA:   3'- -GCGa--GCUGCG---CGGCCUGc---AGCugGUG- -5'
24034 3' -60 NC_005262.1 + 31066 0.66 0.540007
Target:  5'- aCGC-CGACGCGCUcgccgaccugaaGGGCGagccgCGGCC-Cg -3'
miRNA:   3'- -GCGaGCUGCGCGG------------CCUGCa----GCUGGuG- -5'
24034 3' -60 NC_005262.1 + 16286 0.66 0.519905
Target:  5'- uGCU--GCGCGCCGcucgcGGCGugcaaccgaUCGACCGCg -3'
miRNA:   3'- gCGAgcUGCGCGGC-----CUGC---------AGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 53838 0.66 0.550156
Target:  5'- aCGCacCGGCGCgGCgCGGACGgcaagcaGAUCGCg -3'
miRNA:   3'- -GCGa-GCUGCG-CG-GCCUGCag-----CUGGUG- -5'
24034 3' -60 NC_005262.1 + 63593 0.66 0.519905
Target:  5'- gGCUcCGcCGCccccGCCGG-CGUgGACCAUg -3'
miRNA:   3'- gCGA-GCuGCG----CGGCCuGCAgCUGGUG- -5'
24034 3' -60 NC_005262.1 + 58870 0.66 0.519905
Target:  5'- aCGC-CGGCGCaGcCCGcGCGUUGGCUGCu -3'
miRNA:   3'- -GCGaGCUGCG-C-GGCcUGCAGCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.