Results 1 - 20 of 202 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24034 | 3' | -60 | NC_005262.1 | + | 31915 | 1 | 0.002467 |
Target: 5'- cCGCUCGACGCGCCGGACGUCG-CCACc -3' miRNA: 3'- -GCGAGCUGCGCGGCCUGCAGCuGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 55744 | 0.84 | 0.037824 |
Target: 5'- uCGUgacCGGCGUGCCGGACG-CGGCCACg -3' miRNA: 3'- -GCGa--GCUGCGCGGCCUGCaGCUGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 11643 | 0.8 | 0.075298 |
Target: 5'- gGCUCGGCgGCGCCGG-CGUCGcGCUGCa -3' miRNA: 3'- gCGAGCUG-CGCGGCCuGCAGC-UGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 28773 | 0.79 | 0.077376 |
Target: 5'- aGCUCGGCGCaGUgaagaUGGACGUCGACCGu -3' miRNA: 3'- gCGAGCUGCG-CG-----GCCUGCAGCUGGUg -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 57506 | 0.78 | 0.093528 |
Target: 5'- gCGC-CGAaguucagcguCGCGCCGGGCaUCGACCGCg -3' miRNA: 3'- -GCGaGCU----------GCGCGGCCUGcAGCUGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 55474 | 0.78 | 0.096082 |
Target: 5'- uCGUUCGAgGaGCUGGGCGUCGACCGu -3' miRNA: 3'- -GCGAGCUgCgCGGCCUGCAGCUGGUg -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 51120 | 0.78 | 0.101389 |
Target: 5'- uGCUCGACGCGCCGGucgacaagGCGcUCGACg-- -3' miRNA: 3'- gCGAGCUGCGCGGCC--------UGC-AGCUGgug -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 5551 | 0.76 | 0.132303 |
Target: 5'- uGCUCGAUGCG-CGGAuCGUC-ACCACg -3' miRNA: 3'- gCGAGCUGCGCgGCCU-GCAGcUGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 56209 | 0.76 | 0.142782 |
Target: 5'- uCGCUCGGCGCgGUCGGGucgacgaaacgcaUGUCGAUCGCc -3' miRNA: 3'- -GCGAGCUGCG-CGGCCU-------------GCAGCUGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 16349 | 0.76 | 0.143157 |
Target: 5'- gGCUCGGCGCGCUGaucGGCGcCG-CCGCg -3' miRNA: 3'- gCGAGCUGCGCGGC---CUGCaGCuGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 32783 | 0.76 | 0.143157 |
Target: 5'- aGCUCGacaccggcgGCGCGCCGGccaucgcguucgACGUCGGCCuCa -3' miRNA: 3'- gCGAGC---------UGCGCGGCC------------UGCAGCUGGuG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 10451 | 0.75 | 0.146952 |
Target: 5'- uGCUCGGCaaGCCGGGCGgaagccgCGACgACa -3' miRNA: 3'- gCGAGCUGcgCGGCCUGCa------GCUGgUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 49707 | 0.75 | 0.150839 |
Target: 5'- cCGCgaCGGCGUGCCGGGCGgcgaaccggCGGCCGa -3' miRNA: 3'- -GCGa-GCUGCGCGGCCUGCa--------GCUGGUg -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 17744 | 0.75 | 0.163065 |
Target: 5'- aGCUCGGCGCGCUGG-CGggCGAUCu- -3' miRNA: 3'- gCGAGCUGCGCGGCCuGCa-GCUGGug -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 32882 | 0.75 | 0.163065 |
Target: 5'- uGUUCGcCGCGUCGaACGUCGGCCAa -3' miRNA: 3'- gCGAGCuGCGCGGCcUGCAGCUGGUg -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 62820 | 0.74 | 0.171704 |
Target: 5'- aGggCGACGUGCC-GACGaUCGGCCACg -3' miRNA: 3'- gCgaGCUGCGCGGcCUGC-AGCUGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 10972 | 0.74 | 0.190215 |
Target: 5'- gCGCugUCGGCGCGCCGGgaACGcCGGUCGCg -3' miRNA: 3'- -GCG--AGCUGCGCGGCC--UGCaGCUGGUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 51360 | 0.73 | 0.210457 |
Target: 5'- aGCUCGGCaccGCGCCGuccgcGACGcCGGCCAa -3' miRNA: 3'- gCGAGCUG---CGCGGC-----CUGCaGCUGGUg -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 11351 | 0.73 | 0.210457 |
Target: 5'- cCGCUCG-CGCGCgGcACGUCGACgAUg -3' miRNA: 3'- -GCGAGCuGCGCGgCcUGCAGCUGgUG- -5' |
|||||||
24034 | 3' | -60 | NC_005262.1 | + | 33327 | 0.73 | 0.210457 |
Target: 5'- gCGCUCGACGUGCgCGucgauguuGACGUCGGCa-- -3' miRNA: 3'- -GCGAGCUGCGCG-GC--------CUGCAGCUGgug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home