miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24034 3' -60 NC_005262.1 + 53838 0.66 0.550156
Target:  5'- aCGCacCGGCGCgGCgCGGACGgcaagcaGAUCGCg -3'
miRNA:   3'- -GCGa-GCUGCG-CG-GCCUGCag-----CUGGUG- -5'
24034 3' -60 NC_005262.1 + 54041 0.66 0.550156
Target:  5'- aGCaccaUCGA-GCGCaCGGGCGaCGACgGCa -3'
miRNA:   3'- gCG----AGCUgCGCG-GCCUGCaGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 23136 0.66 0.550156
Target:  5'- uCGCgUCGAUGCaguauCCGGcuGCGUCGAugaacuCCACg -3'
miRNA:   3'- -GCG-AGCUGCGc----GGCC--UGCAGCU------GGUG- -5'
24034 3' -60 NC_005262.1 + 32002 0.66 0.550156
Target:  5'- uGgUCGACGU-CCGGcGCGUCGAgcggguugcCCGCg -3'
miRNA:   3'- gCgAGCUGCGcGGCC-UGCAGCU---------GGUG- -5'
24034 3' -60 NC_005262.1 + 28893 0.66 0.550156
Target:  5'- aGCUCGAgaUGCG-CGGGCG-CGAggUCACg -3'
miRNA:   3'- gCGAGCU--GCGCgGCCUGCaGCU--GGUG- -5'
24034 3' -60 NC_005262.1 + 51237 0.66 0.550156
Target:  5'- gCGCUCGGCGacuucuucaCGG-CGUCGAgCGCc -3'
miRNA:   3'- -GCGAGCUGCgcg------GCCuGCAGCUgGUG- -5'
24034 3' -60 NC_005262.1 + 44125 0.66 0.550156
Target:  5'- gCGCaUCGGCGUucccgcguuccgGCCGGACGcgcgcgCGAUCGg -3'
miRNA:   3'- -GCG-AGCUGCG------------CGGCCUGCa-----GCUGGUg -5'
24034 3' -60 NC_005262.1 + 45106 0.66 0.550156
Target:  5'- uGCUCGccaucugccGCGUGuuGG-CGUCcGCCGCc -3'
miRNA:   3'- gCGAGC---------UGCGCggCCuGCAGcUGGUG- -5'
24034 3' -60 NC_005262.1 + 42322 0.66 0.550156
Target:  5'- gCGCUCGGCaucggaaccGCGagCGGguACGUCGuGCCGCc -3'
miRNA:   3'- -GCGAGCUG---------CGCg-GCC--UGCAGC-UGGUG- -5'
24034 3' -60 NC_005262.1 + 15400 0.66 0.549138
Target:  5'- uGCUCGACG-GCCGcccgcccaugcgcGGCGaaUCGACgACu -3'
miRNA:   3'- gCGAGCUGCgCGGC-------------CUGC--AGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 49784 0.66 0.544059
Target:  5'- cCGCU-GcCGCGCCGGAcgccccugcaccgucCGgcccgaUCGGCCGCg -3'
miRNA:   3'- -GCGAgCuGCGCGGCCU---------------GC------AGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 53328 0.66 0.540007
Target:  5'- aGCgacCGcGCGCGCCGcuaccuCGcCGACCGCg -3'
miRNA:   3'- gCGa--GC-UGCGCGGCcu----GCaGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 292 0.66 0.540007
Target:  5'- uGCUCGuGCGCGCgcugCGGAuCGUC-ACCGg -3'
miRNA:   3'- gCGAGC-UGCGCG----GCCU-GCAGcUGGUg -5'
24034 3' -60 NC_005262.1 + 32681 0.66 0.540007
Target:  5'- aGUUCG-CGCuGCCGGcCGcCGGCCu- -3'
miRNA:   3'- gCGAGCuGCG-CGGCCuGCaGCUGGug -5'
24034 3' -60 NC_005262.1 + 59125 0.66 0.540007
Target:  5'- gCGC-CGAgGCgaaccgGCCGGgccGCGUCG-CCGCg -3'
miRNA:   3'- -GCGaGCUgCG------CGGCC---UGCAGCuGGUG- -5'
24034 3' -60 NC_005262.1 + 2125 0.66 0.540007
Target:  5'- uGCUCGcuACGCGCCc--CGUCGAgCAg -3'
miRNA:   3'- gCGAGC--UGCGCGGccuGCAGCUgGUg -5'
24034 3' -60 NC_005262.1 + 31066 0.66 0.540007
Target:  5'- aCGC-CGACGCGCUcgccgaccugaaGGGCGagccgCGGCC-Cg -3'
miRNA:   3'- -GCGaGCUGCGCGG------------CCUGCa----GCUGGuG- -5'
24034 3' -60 NC_005262.1 + 42272 0.66 0.536974
Target:  5'- -cUUCGGCGCGCCGucGcccaucacguacagACGaUCGGCCGCg -3'
miRNA:   3'- gcGAGCUGCGCGGC--C--------------UGC-AGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 7741 0.66 0.535964
Target:  5'- cCGCUCGcggagauagccguCGcCGCCGG-CGUCGACa-- -3'
miRNA:   3'- -GCGAGCu------------GC-GCGGCCuGCAGCUGgug -5'
24034 3' -60 NC_005262.1 + 31577 0.66 0.529921
Target:  5'- aGCUCGAaucCGaCGCCGG-CGaUCGcAUCACc -3'
miRNA:   3'- gCGAGCU---GC-GCGGCCuGC-AGC-UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.