miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24034 3' -60 NC_005262.1 + 292 0.66 0.540007
Target:  5'- uGCUCGuGCGCGCgcugCGGAuCGUC-ACCGg -3'
miRNA:   3'- gCGAGC-UGCGCG----GCCU-GCAGcUGGUg -5'
24034 3' -60 NC_005262.1 + 2125 0.66 0.540007
Target:  5'- uGCUCGcuACGCGCCc--CGUCGAgCAg -3'
miRNA:   3'- gCGAGC--UGCGCGGccuGCAGCUgGUg -5'
24034 3' -60 NC_005262.1 + 3578 0.71 0.289299
Target:  5'- aGC-CGAucCGCGUCGGGCG-CGAuCCGCa -3'
miRNA:   3'- gCGaGCU--GCGCGGCCUGCaGCU-GGUG- -5'
24034 3' -60 NC_005262.1 + 4579 0.68 0.433706
Target:  5'- aGCggCGGCGCuGCuCGGGCGUgagCGcCCGCa -3'
miRNA:   3'- gCGa-GCUGCG-CG-GCCUGCA---GCuGGUG- -5'
24034 3' -60 NC_005262.1 + 4951 0.68 0.406854
Target:  5'- gCGCUCGGCaagcuGCGCCGcGACaagCGAauCCACc -3'
miRNA:   3'- -GCGAGCUG-----CGCGGC-CUGca-GCU--GGUG- -5'
24034 3' -60 NC_005262.1 + 5155 0.71 0.2686
Target:  5'- uGCUCGGCGCGCUGaucggugacggccGGCGUCGcgGgCGCg -3'
miRNA:   3'- gCGAGCUGCGCGGC-------------CUGCAGC--UgGUG- -5'
24034 3' -60 NC_005262.1 + 5227 0.68 0.442883
Target:  5'- uGCaCGAU-CGCCGuGGCGUCGacGCCGCg -3'
miRNA:   3'- gCGaGCUGcGCGGC-CUGCAGC--UGGUG- -5'
24034 3' -60 NC_005262.1 + 5285 0.7 0.317831
Target:  5'- aCGCccUCGGuCGCGCCGGcCG-CGcCCGCg -3'
miRNA:   3'- -GCG--AGCU-GCGCGGCCuGCaGCuGGUG- -5'
24034 3' -60 NC_005262.1 + 5551 0.76 0.132303
Target:  5'- uGCUCGAUGCG-CGGAuCGUC-ACCACg -3'
miRNA:   3'- gCGAGCUGCGCgGCCU-GCAGcUGGUG- -5'
24034 3' -60 NC_005262.1 + 5981 0.66 0.560364
Target:  5'- gCGCUCc-CGC-CCGacaucGACGUCGAUCGCu -3'
miRNA:   3'- -GCGAGcuGCGcGGC-----CUGCAGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 6591 0.66 0.529921
Target:  5'- aGgUCGGCGCGCUGauCGUCGAgCGg -3'
miRNA:   3'- gCgAGCUGCGCGGCcuGCAGCUgGUg -5'
24034 3' -60 NC_005262.1 + 6655 0.68 0.42464
Target:  5'- aGCcUGAuCGCGCCGcuCGUCGGCgGCa -3'
miRNA:   3'- gCGaGCU-GCGCGGCcuGCAGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 6852 0.69 0.356398
Target:  5'- gGCUCGACGaucagGCCGuaguccucggcGAUGcCGGCCGCg -3'
miRNA:   3'- gCGAGCUGCg----CGGC-----------CUGCaGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 7531 0.7 0.340585
Target:  5'- gGUUCGgcgGCGCGUCGGcGCGcUCGACgACa -3'
miRNA:   3'- gCGAGC---UGCGCGGCC-UGC-AGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 7611 0.69 0.398137
Target:  5'- aCGUUa-ACGCGCuuacCGGACGUUGGCCGa -3'
miRNA:   3'- -GCGAgcUGCGCG----GCCUGCAGCUGGUg -5'
24034 3' -60 NC_005262.1 + 7741 0.66 0.535964
Target:  5'- cCGCUCGcggagauagccguCGcCGCCGG-CGUCGACa-- -3'
miRNA:   3'- -GCGAGCu------------GC-GCGGCCuGCAGCUGgug -5'
24034 3' -60 NC_005262.1 + 10451 0.75 0.146952
Target:  5'- uGCUCGGCaaGCCGGGCGgaagccgCGACgACa -3'
miRNA:   3'- gCGAGCUGcgCGGCCUGCa------GCUGgUG- -5'
24034 3' -60 NC_005262.1 + 10548 0.68 0.415689
Target:  5'- uGC-CGACGCGaCCGGcCGcgCGcaGCCGCa -3'
miRNA:   3'- gCGaGCUGCGC-GGCCuGCa-GC--UGGUG- -5'
24034 3' -60 NC_005262.1 + 10644 0.67 0.490329
Target:  5'- aCGCUgCGGCuGCGCgCGGccggucGCGUCGGCauaGCc -3'
miRNA:   3'- -GCGA-GCUG-CGCG-GCC------UGCAGCUGg--UG- -5'
24034 3' -60 NC_005262.1 + 10972 0.74 0.190215
Target:  5'- gCGCugUCGGCGCGCCGGgaACGcCGGUCGCg -3'
miRNA:   3'- -GCG--AGCUGCGCGGCC--UGCaGCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.