miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24034 3' -60 NC_005262.1 + 52704 0.72 0.256513
Target:  5'- cCGC-CGGcCGaCGCCGGACGa-GGCCGCg -3'
miRNA:   3'- -GCGaGCU-GC-GCGGCCUGCagCUGGUG- -5'
24034 3' -60 NC_005262.1 + 62820 0.74 0.171704
Target:  5'- aGggCGACGUGCC-GACGaUCGGCCACg -3'
miRNA:   3'- gCgaGCUGCGCGGcCUGC-AGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 10972 0.74 0.190215
Target:  5'- gCGCugUCGGCGCGCCGGgaACGcCGGUCGCg -3'
miRNA:   3'- -GCG--AGCUGCGCGGCC--UGCaGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 51360 0.73 0.210457
Target:  5'- aGCUCGGCaccGCGCCGuccgcGACGcCGGCCAa -3'
miRNA:   3'- gCGAGCUG---CGCGGC-----CUGCaGCUGGUg -5'
24034 3' -60 NC_005262.1 + 11351 0.73 0.210457
Target:  5'- cCGCUCG-CGCGCgGcACGUCGACgAUg -3'
miRNA:   3'- -GCGAGCuGCGCGgCcUGCAGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 32726 0.73 0.226833
Target:  5'- aGCUCGGCGUGCUGc-CGgcCGACCACu -3'
miRNA:   3'- gCGAGCUGCGCGGCcuGCa-GCUGGUG- -5'
24034 3' -60 NC_005262.1 + 18749 0.73 0.226833
Target:  5'- gGCUCGGCGCGUCGuaGAUGUCGuagaaCGCu -3'
miRNA:   3'- gCGAGCUGCGCGGC--CUGCAGCug---GUG- -5'
24034 3' -60 NC_005262.1 + 40350 0.72 0.234838
Target:  5'- gGC-CGGCGCGCUGaugucgaucgucggcGACGUCGACgGCc -3'
miRNA:   3'- gCGaGCUGCGCGGC---------------CUGCAGCUGgUG- -5'
24034 3' -60 NC_005262.1 + 12932 0.72 0.2407
Target:  5'- uGCgCGGCGCGCUgaaGGGCGUgcgcgacggcaucgcCGACCGCu -3'
miRNA:   3'- gCGaGCUGCGCGG---CCUGCA---------------GCUGGUG- -5'
24034 3' -60 NC_005262.1 + 32882 0.75 0.163065
Target:  5'- uGUUCGcCGCGUCGaACGUCGGCCAa -3'
miRNA:   3'- gCGAGCuGCGCGGCcUGCAGCUGGUg -5'
24034 3' -60 NC_005262.1 + 49707 0.75 0.150839
Target:  5'- cCGCgaCGGCGUGCCGGGCGgcgaaccggCGGCCGa -3'
miRNA:   3'- -GCGa-GCUGCGCGGCCUGCa--------GCUGGUg -5'
24034 3' -60 NC_005262.1 + 10451 0.75 0.146952
Target:  5'- uGCUCGGCaaGCCGGGCGgaagccgCGACgACa -3'
miRNA:   3'- gCGAGCUGcgCGGCCUGCa------GCUGgUG- -5'
24034 3' -60 NC_005262.1 + 11643 0.8 0.075298
Target:  5'- gGCUCGGCgGCGCCGG-CGUCGcGCUGCa -3'
miRNA:   3'- gCGAGCUG-CGCGGCCuGCAGC-UGGUG- -5'
24034 3' -60 NC_005262.1 + 28773 0.79 0.077376
Target:  5'- aGCUCGGCGCaGUgaagaUGGACGUCGACCGu -3'
miRNA:   3'- gCGAGCUGCG-CG-----GCCUGCAGCUGGUg -5'
24034 3' -60 NC_005262.1 + 57506 0.78 0.093528
Target:  5'- gCGC-CGAaguucagcguCGCGCCGGGCaUCGACCGCg -3'
miRNA:   3'- -GCGaGCU----------GCGCGGCCUGcAGCUGGUG- -5'
24034 3' -60 NC_005262.1 + 55474 0.78 0.096082
Target:  5'- uCGUUCGAgGaGCUGGGCGUCGACCGu -3'
miRNA:   3'- -GCGAGCUgCgCGGCCUGCAGCUGGUg -5'
24034 3' -60 NC_005262.1 + 51120 0.78 0.101389
Target:  5'- uGCUCGACGCGCCGGucgacaagGCGcUCGACg-- -3'
miRNA:   3'- gCGAGCUGCGCGGCC--------UGC-AGCUGgug -5'
24034 3' -60 NC_005262.1 + 5551 0.76 0.132303
Target:  5'- uGCUCGAUGCG-CGGAuCGUC-ACCACg -3'
miRNA:   3'- gCGAGCUGCGCgGCCU-GCAGcUGGUG- -5'
24034 3' -60 NC_005262.1 + 32783 0.76 0.143157
Target:  5'- aGCUCGacaccggcgGCGCGCCGGccaucgcguucgACGUCGGCCuCa -3'
miRNA:   3'- gCGAGC---------UGCGCGGCC------------UGCAGCUGGuG- -5'
24034 3' -60 NC_005262.1 + 16349 0.76 0.143157
Target:  5'- gGCUCGGCGCGCUGaucGGCGcCG-CCGCg -3'
miRNA:   3'- gCGAGCUGCGCGGC---CUGCaGCuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.