miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24034 5' -56.3 NC_005262.1 + 49329 0.66 0.690126
Target:  5'- ---gGGCaugaccGACGAGCAGGcGCGcgccgCGCUCg -3'
miRNA:   3'- cacaCCG------CUGCUCGUUC-CGUa----GCGAG- -5'
24034 5' -56.3 NC_005262.1 + 56611 0.66 0.690126
Target:  5'- cGUG-GGCGACGA--AGGGCAgcuaCGaCUCg -3'
miRNA:   3'- -CACaCCGCUGCUcgUUCCGUa---GC-GAG- -5'
24034 5' -56.3 NC_005262.1 + 15482 0.66 0.679286
Target:  5'- ---cGGCGcuuacacCGAGCGcGGCGgcUCGCUCa -3'
miRNA:   3'- cacaCCGCu------GCUCGUuCCGU--AGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 12709 0.66 0.678199
Target:  5'- ---cGGUGcCGAGCAaugcggcgagggaGGGCG-CGCUCa -3'
miRNA:   3'- cacaCCGCuGCUCGU-------------UCCGUaGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 45999 0.66 0.678199
Target:  5'- cGUGUucGCGuuccugcACGcGCAAGGCGUCGCg- -3'
miRNA:   3'- -CACAc-CGC-------UGCuCGUUCCGUAGCGag -5'
24034 5' -56.3 NC_005262.1 + 18651 0.66 0.668402
Target:  5'- -gGUGGaCG-UGAGCAGcGGCAUgaaGCUCu -3'
miRNA:   3'- caCACC-GCuGCUCGUU-CCGUAg--CGAG- -5'
24034 5' -56.3 NC_005262.1 + 51966 0.66 0.668402
Target:  5'- ---cGGCGGCGucGGCucGGUcgUGCUCg -3'
miRNA:   3'- cacaCCGCUGC--UCGuuCCGuaGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 25630 0.66 0.668402
Target:  5'- -aGUGGUGACGGGCuccaucccGGCcgUGC-Cg -3'
miRNA:   3'- caCACCGCUGCUCGuu------CCGuaGCGaG- -5'
24034 5' -56.3 NC_005262.1 + 32085 0.66 0.668402
Target:  5'- ---cGGCcuucucgauGACGAGCGGGGCcaugaugucgGUCGCUg -3'
miRNA:   3'- cacaCCG---------CUGCUCGUUCCG----------UAGCGAg -5'
24034 5' -56.3 NC_005262.1 + 46796 0.66 0.658577
Target:  5'- ---cGGCGGCGAGCcgaugaccgacgugcAGGCccgcgCGCUCg -3'
miRNA:   3'- cacaCCGCUGCUCGu--------------UCCGua---GCGAG- -5'
24034 5' -56.3 NC_005262.1 + 56644 0.66 0.646542
Target:  5'- uGUG-GGgGAUGAacgcccGCAAGGC-UCGCUUc -3'
miRNA:   3'- -CACaCCgCUGCU------CGUUCCGuAGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 8961 0.66 0.645447
Target:  5'- gGUGUGccccaauGCGACGAGC----UAUCGCUCg -3'
miRNA:   3'- -CACAC-------CGCUGCUCGuuccGUAGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 60642 0.66 0.635588
Target:  5'- ---cGaGCGGCGAGCAccgcGGGCAagcacucaucgCGCUCg -3'
miRNA:   3'- cacaC-CGCUGCUCGU----UCCGUa----------GCGAG- -5'
24034 5' -56.3 NC_005262.1 + 12927 0.67 0.613679
Target:  5'- ---cGGCacGACGGuucccGCGAGGCcgCGCUCc -3'
miRNA:   3'- cacaCCG--CUGCU-----CGUUCCGuaGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 61163 0.67 0.612585
Target:  5'- ---cGGCGGCGGGCGagcugacGGGCG-CGCg- -3'
miRNA:   3'- cacaCCGCUGCUCGU-------UCCGUaGCGag -5'
24034 5' -56.3 NC_005262.1 + 46682 0.67 0.602744
Target:  5'- cUGUGGCGucuGCG-GCGAGGaCggCGCUg -3'
miRNA:   3'- cACACCGC---UGCuCGUUCC-GuaGCGAg -5'
24034 5' -56.3 NC_005262.1 + 56917 0.68 0.559339
Target:  5'- ---cGGCGA-GAuCAAGGCcgCGCUCg -3'
miRNA:   3'- cacaCCGCUgCUcGUUCCGuaGCGAG- -5'
24034 5' -56.3 NC_005262.1 + 16360 0.68 0.559339
Target:  5'- ---cGGCG-CGcAGCAAGGCAUUGUg- -3'
miRNA:   3'- cacaCCGCuGC-UCGUUCCGUAGCGag -5'
24034 5' -56.3 NC_005262.1 + 45395 0.68 0.548613
Target:  5'- cUG-GGCGGCGcAGCAgcAGGCAgccgCGCa- -3'
miRNA:   3'- cACaCCGCUGC-UCGU--UCCGUa---GCGag -5'
24034 5' -56.3 NC_005262.1 + 52817 0.68 0.527362
Target:  5'- -aGUGGCaggcgcucGGCGAGCGgcugaAGGCugCGCUCa -3'
miRNA:   3'- caCACCG--------CUGCUCGU-----UCCGuaGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.