miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 34733 0.65 0.598045
Target:  5'- aCGCaggUCGAGccgaacacggugCGCGUcgUGCCGgcGCCGCu -3'
miRNA:   3'- -GCGa--AGCUCaa----------GCGCG--ACGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 26396 0.66 0.591728
Target:  5'- uGCUUCGGgcucuuGUUCGuCGuCUGCCccugacgcacguGGuCCGCg -3'
miRNA:   3'- gCGAAGCU------CAAGC-GC-GACGG------------CC-GGCG- -5'
24035 3' -59 NC_005262.1 + 34589 0.66 0.591728
Target:  5'- uCGUcUCGcAGaagUCGCGC-GCCG-CCGCg -3'
miRNA:   3'- -GCGaAGC-UCa--AGCGCGaCGGCcGGCG- -5'
24035 3' -59 NC_005262.1 + 33261 0.66 0.591728
Target:  5'- gCGCUUccugucgauccgCGAGgcguaccgcaUCGCGCgcacGCCGGgCGCc -3'
miRNA:   3'- -GCGAA------------GCUCa---------AGCGCGa---CGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 33654 0.66 0.591728
Target:  5'- gGCUgaCGAG--CGCGCcucGCUGGUCGCc -3'
miRNA:   3'- gCGAa-GCUCaaGCGCGa--CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 57668 0.66 0.581227
Target:  5'- gGCacgaUCGAcuucUCGCGC-GCCGGgCGCg -3'
miRNA:   3'- gCGa---AGCUca--AGCGCGaCGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 28716 0.66 0.581227
Target:  5'- ----aCGAGUUC-CGCcGCgaGGCCGCg -3'
miRNA:   3'- gcgaaGCUCAAGcGCGaCGg-CCGGCG- -5'
24035 3' -59 NC_005262.1 + 12749 0.66 0.581227
Target:  5'- gGCgcaGGGUUCGcCGCgcGCCGcGCgCGCu -3'
miRNA:   3'- gCGaagCUCAAGC-GCGa-CGGC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 17752 0.66 0.581227
Target:  5'- cCGCUUCcAGcucggCGCGCUGgCGGgCGa -3'
miRNA:   3'- -GCGAAGcUCaa---GCGCGACgGCCgGCg -5'
24035 3' -59 NC_005262.1 + 18602 0.66 0.581227
Target:  5'- aGCUUCGAGgugcUGCGC-GCuCGGCUu- -3'
miRNA:   3'- gCGAAGCUCaa--GCGCGaCG-GCCGGcg -5'
24035 3' -59 NC_005262.1 + 40807 0.66 0.580179
Target:  5'- uGC-UCGAGggcgUCaGCGCcGCCguauuauGGCCGUg -3'
miRNA:   3'- gCGaAGCUCa---AG-CGCGaCGG-------CCGGCG- -5'
24035 3' -59 NC_005262.1 + 6852 0.66 0.569722
Target:  5'- gGC-UCGAcgaucaggccguaGUccUCgGCGaUGCCGGCCGCg -3'
miRNA:   3'- gCGaAGCU-------------CA--AG-CGCgACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 59454 0.66 0.56451
Target:  5'- gCGCcUgGAGcUCgGCGUUGCCGGCguacuuugcgaugauCGCg -3'
miRNA:   3'- -GCGaAgCUCaAG-CGCGACGGCCG---------------GCG- -5'
24035 3' -59 NC_005262.1 + 21685 0.66 0.56035
Target:  5'- aGCggCGGcgcCGCGCUGCUGuaCGCg -3'
miRNA:   3'- gCGaaGCUcaaGCGCGACGGCcgGCG- -5'
24035 3' -59 NC_005262.1 + 54545 0.66 0.56035
Target:  5'- gCGCcUCGAcgUUGCGCUgauacuuccgGUCGGCgCGCg -3'
miRNA:   3'- -GCGaAGCUcaAGCGCGA----------CGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 53440 0.66 0.56035
Target:  5'- gCGCcgaUCaGGUUCGCGCgGUCGGCgagguagcggCGCg -3'
miRNA:   3'- -GCGa--AGcUCAAGCGCGaCGGCCG----------GCG- -5'
24035 3' -59 NC_005262.1 + 49766 0.66 0.56035
Target:  5'- cCGCgccCGAGgcucCGgcCGCUGCCGcGCCGg -3'
miRNA:   3'- -GCGaa-GCUCaa--GC--GCGACGGC-CGGCg -5'
24035 3' -59 NC_005262.1 + 44125 0.66 0.56035
Target:  5'- gCGCaUCGGcGUUccCGCGUU-CCGGCCGg -3'
miRNA:   3'- -GCGaAGCU-CAA--GCGCGAcGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 46528 0.66 0.56035
Target:  5'- cCGCgcaGcAGcccaGCGCggcGCCGGCCGCc -3'
miRNA:   3'- -GCGaagC-UCaag-CGCGa--CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 60442 0.66 0.56035
Target:  5'- aGCgacCGAGaaCGCGCUgcGCCuGUCGCu -3'
miRNA:   3'- gCGaa-GCUCaaGCGCGA--CGGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.