miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 46528 0.66 0.56035
Target:  5'- cCGCgcaGcAGcccaGCGCggcGCCGGCCGCc -3'
miRNA:   3'- -GCGaagC-UCaag-CGCGa--CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 6649 0.66 0.54689
Target:  5'- gCGCUUCGA--UCGCGUcGCCGuccucgauccacgaGCgGCg -3'
miRNA:   3'- -GCGAAGCUcaAGCGCGaCGGC--------------CGgCG- -5'
24035 3' -59 NC_005262.1 + 25728 0.66 0.539685
Target:  5'- uGCaggcCGAGgcgaUCGCGCagGCCGgcaaGCCGCu -3'
miRNA:   3'- gCGaa--GCUCa---AGCGCGa-CGGC----CGGCG- -5'
24035 3' -59 NC_005262.1 + 21685 0.66 0.56035
Target:  5'- aGCggCGGcgcCGCGCUGCUGuaCGCg -3'
miRNA:   3'- gCGaaGCUcaaGCGCGACGGCcgGCG- -5'
24035 3' -59 NC_005262.1 + 49766 0.66 0.56035
Target:  5'- cCGCgccCGAGgcucCGgcCGCUGCCGcGCCGg -3'
miRNA:   3'- -GCGaa-GCUCaa--GC--GCGACGGC-CGGCg -5'
24035 3' -59 NC_005262.1 + 57668 0.66 0.581227
Target:  5'- gGCacgaUCGAcuucUCGCGC-GCCGGgCGCg -3'
miRNA:   3'- gCGa---AGCUca--AGCGCGaCGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 28716 0.66 0.581227
Target:  5'- ----aCGAGUUC-CGCcGCgaGGCCGCg -3'
miRNA:   3'- gcgaaGCUCAAGcGCGaCGg-CCGGCG- -5'
24035 3' -59 NC_005262.1 + 44125 0.66 0.56035
Target:  5'- gCGCaUCGGcGUUccCGCGUU-CCGGCCGg -3'
miRNA:   3'- -GCGaAGCU-CAA--GCGCGAcGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 60442 0.66 0.56035
Target:  5'- aGCgacCGAGaaCGCGCUgcGCCuGUCGCu -3'
miRNA:   3'- gCGaa-GCUCaaGCGCGA--CGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 21446 0.67 0.509198
Target:  5'- aGCUggUCGAGUUC-CGCcGCuuugCGuGCCGCu -3'
miRNA:   3'- gCGA--AGCUCAAGcGCGaCG----GC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 40581 0.67 0.499196
Target:  5'- uGCcgCGAccgUCGCGCUGaCGGUgGCg -3'
miRNA:   3'- gCGaaGCUca-AGCGCGACgGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 50921 0.67 0.489281
Target:  5'- gGCaUCGAGcaCGaaacgaagaUGgUGCCGGCCGCc -3'
miRNA:   3'- gCGaAGCUCaaGC---------GCgACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 32299 0.67 0.489281
Target:  5'- gCGCgaacgUCGAGgcagcgcgUGCGCUGUUcaugGGCCGUc -3'
miRNA:   3'- -GCGa----AGCUCaa------GCGCGACGG----CCGGCG- -5'
24035 3' -59 NC_005262.1 + 1139 0.67 0.479459
Target:  5'- cCGCUgCGGGcUUCGaUGCUGCCGcGCgGg -3'
miRNA:   3'- -GCGAaGCUC-AAGC-GCGACGGC-CGgCg -5'
24035 3' -59 NC_005262.1 + 11651 0.67 0.509198
Target:  5'- gGCgcCGGcgUCGCGCUGCacgcuGGCCGg -3'
miRNA:   3'- gCGaaGCUcaAGCGCGACGg----CCGGCg -5'
24035 3' -59 NC_005262.1 + 11721 0.67 0.509198
Target:  5'- uGCUUCaGGUgUUGCGCaUGCuCGGCuuCGCg -3'
miRNA:   3'- gCGAAGcUCA-AGCGCG-ACG-GCCG--GCG- -5'
24035 3' -59 NC_005262.1 + 2202 0.67 0.529449
Target:  5'- gGCUUCGA--UCGCGCggcacaucgcGUCGaaGCCGCu -3'
miRNA:   3'- gCGAAGCUcaAGCGCGa---------CGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 54901 0.67 0.513223
Target:  5'- gCGCcgCGccAGUUCGacggcucgcaccugaCGCUGCCGGgCGUg -3'
miRNA:   3'- -GCGaaGC--UCAAGC---------------GCGACGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 50293 0.67 0.529449
Target:  5'- aGCccgUGAcGgcCGCGCggauugaggaGCCGGCCGCa -3'
miRNA:   3'- gCGaa-GCU-CaaGCGCGa---------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 43000 0.67 0.529449
Target:  5'- cCGCUUCGuG-UCGgGCcaguucuUCGGCCGCu -3'
miRNA:   3'- -GCGAAGCuCaAGCgCGac-----GGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.