miRNA display CGI


Results 41 - 60 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 40581 0.67 0.499196
Target:  5'- uGCcgCGAccgUCGCGCUGaCGGUgGCg -3'
miRNA:   3'- gCGaaGCUca-AGCGCGACgGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 43943 0.67 0.483376
Target:  5'- uCGCgcCGAGgUccugccggccaccgcCGCGCgcgGCCGGcCCGCg -3'
miRNA:   3'- -GCGaaGCUCaA---------------GCGCGa--CGGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 41100 0.67 0.489281
Target:  5'- gGCUgaagCGAGaUCGCGgUGCCaucagcagcgaGcGCCGCc -3'
miRNA:   3'- gCGAa---GCUCaAGCGCgACGG-----------C-CGGCG- -5'
24035 3' -59 NC_005262.1 + 53784 0.67 0.489281
Target:  5'- aCGCggcCGGGUUCuGCGC-GCCcGGCUGa -3'
miRNA:   3'- -GCGaa-GCUCAAG-CGCGaCGG-CCGGCg -5'
24035 3' -59 NC_005262.1 + 21444 0.67 0.499196
Target:  5'- gCGC-UCGcug-CGCGCgGCCuuGGCCGCc -3'
miRNA:   3'- -GCGaAGCucaaGCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 48373 0.67 0.505187
Target:  5'- gGCcUCGAGguuguuccaagcaUCGCGCUGCCcGGCauaCGUc -3'
miRNA:   3'- gCGaAGCUCa------------AGCGCGACGG-CCG---GCG- -5'
24035 3' -59 NC_005262.1 + 17948 0.67 0.519284
Target:  5'- cCGUggUCGAccUCGUaGCUGUcgaCGGCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCG-CGACG---GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 5285 0.67 0.519284
Target:  5'- aCGCccUCGG--UCGCGCcgGCCGcGcCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCGCGa-CGGC-C-GGCG- -5'
24035 3' -59 NC_005262.1 + 49316 0.67 0.529449
Target:  5'- uCGCgcgCGGacugCGCGCcGCCgaGGCCGCc -3'
miRNA:   3'- -GCGaa-GCUcaa-GCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 40442 0.67 0.479459
Target:  5'- uCGCcgacgaUCGAcaUCaGCGC-GCCGGCCGUg -3'
miRNA:   3'- -GCGa-----AGCUcaAG-CGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 9105 0.67 0.479459
Target:  5'- aCGUUaCGGGUUCGUGCguccGCCcuaucaugcGGCCGa -3'
miRNA:   3'- -GCGAaGCUCAAGCGCGa---CGG---------CCGGCg -5'
24035 3' -59 NC_005262.1 + 49809 0.67 0.529449
Target:  5'- gGCUUCGgccgccGGUUCGcCGC--CCGGCaCGCc -3'
miRNA:   3'- gCGAAGC------UCAAGC-GCGacGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 33988 0.67 0.479459
Target:  5'- cCGCUacCGA--UCGgGCcGCCGGCCGa -3'
miRNA:   3'- -GCGAa-GCUcaAGCgCGaCGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 50254 0.67 0.479459
Target:  5'- uGCUUCGucAGguaGCGCaGgCGGUCGCg -3'
miRNA:   3'- gCGAAGC--UCaagCGCGaCgGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 35666 0.67 0.478482
Target:  5'- cCGCgcCGAGcacaacaUUCGCGCUcuuucccgcGCCGGCgaGCg -3'
miRNA:   3'- -GCGaaGCUC-------AAGCGCGA---------CGGCCGg-CG- -5'
24035 3' -59 NC_005262.1 + 32299 0.67 0.489281
Target:  5'- gCGCgaacgUCGAGgcagcgcgUGCGCUGUUcaugGGCCGUc -3'
miRNA:   3'- -GCGa----AGCUCaa------GCGCGACGG----CCGGCG- -5'
24035 3' -59 NC_005262.1 + 1139 0.67 0.479459
Target:  5'- cCGCUgCGGGcUUCGaUGCUGCCGcGCgGg -3'
miRNA:   3'- -GCGAaGCUC-AAGC-GCGACGGC-CGgCg -5'
24035 3' -59 NC_005262.1 + 56958 0.68 0.441188
Target:  5'- gCGCgggCGAGUUCGCggGCgugGUCGGCaagacCGCc -3'
miRNA:   3'- -GCGaa-GCUCAAGCG--CGa--CGGCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 53846 0.68 0.422713
Target:  5'- gCGCggCGcggacggcaagcAGaUCGCGCUcaaGCCGGCCGa -3'
miRNA:   3'- -GCGaaGC------------UCaAGCGCGA---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 58880 0.68 0.431893
Target:  5'- aGCccgCGcGUUgGCuGCUGCCGcGCUGCg -3'
miRNA:   3'- gCGaa-GCuCAAgCG-CGACGGC-CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.