Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24035 | 3' | -59 | NC_005262.1 | + | 45358 | 0.71 | 0.317788 |
Target: 5'- gCGCgga-AGUUCGCGUucgacgcuccgagguUGCCGGUCGCc -3' miRNA: 3'- -GCGaagcUCAAGCGCG---------------ACGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 23449 | 0.71 | 0.322313 |
Target: 5'- gGcCUUCGccgccgCGCGCUucacGCCGGCCGUg -3' miRNA: 3'- gC-GAAGCucaa--GCGCGA----CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 51924 | 0.71 | 0.300165 |
Target: 5'- gCGCUUC-AGcacUUCGCGaC-GUCGGCCGCg -3' miRNA: 3'- -GCGAAGcUC---AAGCGC-GaCGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 2588 | 0.71 | 0.300165 |
Target: 5'- cCGCUcuaUCGGGU---UGCUGCUGGUCGCc -3' miRNA: 3'- -GCGA---AGCUCAagcGCGACGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 32382 | 0.71 | 0.300165 |
Target: 5'- gCGCUgccUCGAcGUUCGCGC--CCGcGCCGUa -3' miRNA: 3'- -GCGA---AGCU-CAAGCGCGacGGC-CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 58940 | 0.71 | 0.297302 |
Target: 5'- gCGCUUCucGGUcggCGCGCagcagucgaaccaGCCGGCCGCc -3' miRNA: 3'- -GCGAAGc-UCAa--GCGCGa------------CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 6292 | 0.71 | 0.293048 |
Target: 5'- gGcCUUCGccgccuucUUGCGCUcGCCGGCCGCc -3' miRNA: 3'- gC-GAAGCuca-----AGCGCGA-CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 55795 | 0.71 | 0.293048 |
Target: 5'- gGCUUCGAGcagaaCGCcGCCGGCgGCu -3' miRNA: 3'- gCGAAGCUCaagc-GCGaCGGCCGgCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 16620 | 0.71 | 0.319291 |
Target: 5'- gCGUUUCGAGcugggcgauaucgUCGUGCUGCgCGaGCaCGCg -3' miRNA: 3'- -GCGAAGCUCa------------AGCGCGACG-GC-CG-GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 12918 | 0.71 | 0.293048 |
Target: 5'- gGUUcccgCGAGgcCGCGCUccuucuucacgcGCCGGCUGCg -3' miRNA: 3'- gCGAa---GCUCaaGCGCGA------------CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 34951 | 0.7 | 0.337745 |
Target: 5'- gGCggCaAGUUCGaCGCggcGCuCGGCCGCa -3' miRNA: 3'- gCGaaGcUCAAGC-GCGa--CG-GCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 12800 | 0.7 | 0.34566 |
Target: 5'- aGCaUUGGGcggCGCGCaGCCGGCgCGUg -3' miRNA: 3'- gCGaAGCUCaa-GCGCGaCGGCCG-GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 48656 | 0.7 | 0.353706 |
Target: 5'- aCGCagcagGAGcUCGacaaGCUGCCGGCCaGCg -3' miRNA: 3'- -GCGaag--CUCaAGCg---CGACGGCCGG-CG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 4787 | 0.7 | 0.361885 |
Target: 5'- uCGCaugUCGGGau--CGgaGCCGGCCGCg -3' miRNA: 3'- -GCGa--AGCUCaagcGCgaCGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 12375 | 0.7 | 0.370194 |
Target: 5'- aCGUUgcCGAGaaagcUCG-GCUcGCCGGCCGCg -3' miRNA: 3'- -GCGAa-GCUCa----AGCgCGA-CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 33004 | 0.7 | 0.353706 |
Target: 5'- gCGCUggCGAGcgUCGCGCgugcgacgccGCCGGCUugGCc -3' miRNA: 3'- -GCGAa-GCUCa-AGCGCGa---------CGGCCGG--CG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 58743 | 0.7 | 0.361885 |
Target: 5'- gGCUugaUCGuAGaacUCGCGC-GcCCGGCCGCu -3' miRNA: 3'- gCGA---AGC-UCa--AGCGCGaC-GGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 22206 | 0.69 | 0.377783 |
Target: 5'- aCGC--CGGGcUCGCGCUcgacaagcucacgGCCGcGCCGCc -3' miRNA: 3'- -GCGaaGCUCaAGCGCGA-------------CGGC-CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 5302 | 0.69 | 0.40471 |
Target: 5'- aCGCggUCGAGgcggUCGgaGCUgGCCGGCaggaGCu -3' miRNA: 3'- -GCGa-AGCUCa---AGCg-CGA-CGGCCGg---CG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 47737 | 0.69 | 0.413651 |
Target: 5'- uGUaUCuGGU--GCGCcGCCGGCCGCg -3' miRNA: 3'- gCGaAGcUCAagCGCGaCGGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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