Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24035 | 3' | -59 | NC_005262.1 | + | 32673 | 1.11 | 0.000427 |
Target: 5'- aCGCUUCGAGUUCGCGCUGCCGGCCGCc -3' miRNA: 3'- -GCGAAGCUCAAGCGCGACGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 17711 | 0.78 | 0.109766 |
Target: 5'- uGCUcggCGAGcUCGCGCUGCUGG-CGCu -3' miRNA: 3'- gCGAa--GCUCaAGCGCGACGGCCgGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 47842 | 0.77 | 0.112781 |
Target: 5'- gCGCgaugcCGGGUUCGcCGCgGCCGGCgGCg -3' miRNA: 3'- -GCGaa---GCUCAAGC-GCGaCGGCCGgCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 32713 | 0.76 | 0.132552 |
Target: 5'- gGCgacaucaUCGAGcucggCGUGCUGCCGGCCGa -3' miRNA: 3'- gCGa------AGCUCaa---GCGCGACGGCCGGCg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 10644 | 0.76 | 0.139824 |
Target: 5'- aCGCUgCGGcugCGCGCgGCCGGUCGCg -3' miRNA: 3'- -GCGAaGCUcaaGCGCGaCGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 18291 | 0.76 | 0.14746 |
Target: 5'- cCGUUUCGGGUagGCGC-GCCGGuUCGCu -3' miRNA: 3'- -GCGAAGCUCAagCGCGaCGGCC-GGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 50264 | 0.76 | 0.14746 |
Target: 5'- cCGCaaCGAGggCGCGCccgcGCCGGCCGa -3' miRNA: 3'- -GCGaaGCUCaaGCGCGa---CGGCCGGCg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 41209 | 0.75 | 0.168235 |
Target: 5'- cCGCUUCGAGcacCGUauGaCUGCCGGCaCGCu -3' miRNA: 3'- -GCGAAGCUCaa-GCG--C-GACGGCCG-GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 10607 | 0.75 | 0.172693 |
Target: 5'- cCGUUUCGGccgcccccgCGCuGCUGCUGGCCGCc -3' miRNA: 3'- -GCGAAGCUcaa------GCG-CGACGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 40329 | 0.74 | 0.196595 |
Target: 5'- cCGCUUCGAGcaUCG-GCUcacgGCCGGCgCGCu -3' miRNA: 3'- -GCGAAGCUCa-AGCgCGA----CGGCCG-GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 17087 | 0.74 | 0.20171 |
Target: 5'- aGCacgaCGAGcgCGCGCUcgGCCGGCgGCa -3' miRNA: 3'- gCGaa--GCUCaaGCGCGA--CGGCCGgCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 12857 | 0.73 | 0.217751 |
Target: 5'- uCGUgcCGAGcUUCGCGCUGCCGuGCaCGg -3' miRNA: 3'- -GCGaaGCUC-AAGCGCGACGGC-CG-GCg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 34290 | 0.73 | 0.233695 |
Target: 5'- gCGCUgucgaaggacagCGAGUUCGCGaacgGCaCGGUCGCc -3' miRNA: 3'- -GCGAa-----------GCUCAAGCGCga--CG-GCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 10950 | 0.73 | 0.234871 |
Target: 5'- gCGCUacgCGcAGcaggcaUUCGCGCUGUCGGCgCGCc -3' miRNA: 3'- -GCGAa--GC-UC------AAGCGCGACGGCCG-GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 43148 | 0.73 | 0.240823 |
Target: 5'- aGCUgccgCG-GcgCGCGgUGCCGGCCGg -3' miRNA: 3'- gCGAa---GCuCaaGCGCgACGGCCGGCg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 43807 | 0.72 | 0.244455 |
Target: 5'- aGCuUUCGGGcgaUCGCgGCgacacggccgcggGCCGGCCGCg -3' miRNA: 3'- gCG-AAGCUCa--AGCG-CGa------------CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 33879 | 0.72 | 0.246902 |
Target: 5'- cCGCgcgCGAGacgaUCGUGCgucgGCCGGCgGCc -3' miRNA: 3'- -GCGaa-GCUCa---AGCGCGa---CGGCCGgCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 45697 | 0.72 | 0.259439 |
Target: 5'- gCGCaUCGAGggcCG-GCaGCCGGCCGUg -3' miRNA: 3'- -GCGaAGCUCaa-GCgCGaCGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 42414 | 0.72 | 0.279211 |
Target: 5'- gGCUUUcAGgcgGCGCcaGCCGGCCGCa -3' miRNA: 3'- gCGAAGcUCaagCGCGa-CGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 12696 | 0.71 | 0.288842 |
Target: 5'- uGCggCGAGggagggCGCGCUcauccgcgacgccucGCCGGCgGCa -3' miRNA: 3'- gCGaaGCUCaa----GCGCGA---------------CGGCCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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