miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 55795 0.71 0.293048
Target:  5'- gGCUUCGAGcagaaCGCcGCCGGCgGCu -3'
miRNA:   3'- gCGAAGCUCaagc-GCGaCGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 12918 0.71 0.293048
Target:  5'- gGUUcccgCGAGgcCGCGCUccuucuucacgcGCCGGCUGCg -3'
miRNA:   3'- gCGAa---GCUCaaGCGCGA------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 6292 0.71 0.293048
Target:  5'- gGcCUUCGccgccuucUUGCGCUcGCCGGCCGCc -3'
miRNA:   3'- gC-GAAGCuca-----AGCGCGA-CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 58940 0.71 0.297302
Target:  5'- gCGCUUCucGGUcggCGCGCagcagucgaaccaGCCGGCCGCc -3'
miRNA:   3'- -GCGAAGc-UCAa--GCGCGa------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 32382 0.71 0.300165
Target:  5'- gCGCUgccUCGAcGUUCGCGC--CCGcGCCGUa -3'
miRNA:   3'- -GCGA---AGCU-CAAGCGCGacGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 51924 0.71 0.300165
Target:  5'- gCGCUUC-AGcacUUCGCGaC-GUCGGCCGCg -3'
miRNA:   3'- -GCGAAGcUC---AAGCGC-GaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 2588 0.71 0.300165
Target:  5'- cCGCUcuaUCGGGU---UGCUGCUGGUCGCc -3'
miRNA:   3'- -GCGA---AGCUCAagcGCGACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 45358 0.71 0.317788
Target:  5'- gCGCgga-AGUUCGCGUucgacgcuccgagguUGCCGGUCGCc -3'
miRNA:   3'- -GCGaagcUCAAGCGCG---------------ACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 16620 0.71 0.319291
Target:  5'- gCGUUUCGAGcugggcgauaucgUCGUGCUGCgCGaGCaCGCg -3'
miRNA:   3'- -GCGAAGCUCa------------AGCGCGACG-GC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 23449 0.71 0.322313
Target:  5'- gGcCUUCGccgccgCGCGCUucacGCCGGCCGUg -3'
miRNA:   3'- gC-GAAGCucaa--GCGCGA----CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 34951 0.7 0.337745
Target:  5'- gGCggCaAGUUCGaCGCggcGCuCGGCCGCa -3'
miRNA:   3'- gCGaaGcUCAAGC-GCGa--CG-GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 12800 0.7 0.34566
Target:  5'- aGCaUUGGGcggCGCGCaGCCGGCgCGUg -3'
miRNA:   3'- gCGaAGCUCaa-GCGCGaCGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 48656 0.7 0.353706
Target:  5'- aCGCagcagGAGcUCGacaaGCUGCCGGCCaGCg -3'
miRNA:   3'- -GCGaag--CUCaAGCg---CGACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 33004 0.7 0.353706
Target:  5'- gCGCUggCGAGcgUCGCGCgugcgacgccGCCGGCUugGCc -3'
miRNA:   3'- -GCGAa-GCUCa-AGCGCGa---------CGGCCGG--CG- -5'
24035 3' -59 NC_005262.1 + 58743 0.7 0.361885
Target:  5'- gGCUugaUCGuAGaacUCGCGC-GcCCGGCCGCu -3'
miRNA:   3'- gCGA---AGC-UCa--AGCGCGaC-GGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 4787 0.7 0.361885
Target:  5'- uCGCaugUCGGGau--CGgaGCCGGCCGCg -3'
miRNA:   3'- -GCGa--AGCUCaagcGCgaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 12375 0.7 0.370194
Target:  5'- aCGUUgcCGAGaaagcUCG-GCUcGCCGGCCGCg -3'
miRNA:   3'- -GCGAa-GCUCa----AGCgCGA-CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 22206 0.69 0.377783
Target:  5'- aCGC--CGGGcUCGCGCUcgacaagcucacgGCCGcGCCGCc -3'
miRNA:   3'- -GCGaaGCUCaAGCGCGA-------------CGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 10700 0.69 0.378632
Target:  5'- gCGCagaUCGAGgcCGCGCgcacgcgGCCGGCgcuccCGCa -3'
miRNA:   3'- -GCGa--AGCUCaaGCGCGa------CGGCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 57518 0.69 0.378632
Target:  5'- cCGCggaCG-GUgccggaGCGUUGUCGGCCGCc -3'
miRNA:   3'- -GCGaa-GCuCAag----CGCGACGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.