miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 48126 0.69 0.387199
Target:  5'- gCGCUUgCGG----GCGCgGCCGGCUGCu -3'
miRNA:   3'- -GCGAA-GCUcaagCGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 17263 0.69 0.395017
Target:  5'- aCGCggUCGcGUccUCGCGCgcggccuUGCCGGCCu- -3'
miRNA:   3'- -GCGa-AGCuCA--AGCGCG-------ACGGCCGGcg -5'
24035 3' -59 NC_005262.1 + 22978 0.69 0.395892
Target:  5'- cCGCgaUCGAGgaUCGUGCucUGCCGGCuCGa -3'
miRNA:   3'- -GCGa-AGCUCa-AGCGCG--ACGGCCG-GCg -5'
24035 3' -59 NC_005262.1 + 17660 0.69 0.395892
Target:  5'- aGCUucuccUCGGcUUCGCGC-GCCG-CCGCg -3'
miRNA:   3'- gCGA-----AGCUcAAGCGCGaCGGCcGGCG- -5'
24035 3' -59 NC_005262.1 + 5302 0.69 0.40471
Target:  5'- aCGCggUCGAGgcggUCGgaGCUgGCCGGCaggaGCu -3'
miRNA:   3'- -GCGa-AGCUCa---AGCg-CGA-CGGCCGg---CG- -5'
24035 3' -59 NC_005262.1 + 11867 0.69 0.40471
Target:  5'- cCGCUgucggCGAcGUguaUCGCGCgaaaGgUGGCCGCg -3'
miRNA:   3'- -GCGAa----GCU-CA---AGCGCGa---CgGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 47737 0.69 0.413651
Target:  5'- uGUaUCuGGU--GCGCcGCCGGCCGCg -3'
miRNA:   3'- gCGaAGcUCAagCGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 26566 0.69 0.413651
Target:  5'- gCGCUgCGccAGUUCGCGCaggcauacGCUGGCgGCc -3'
miRNA:   3'- -GCGAaGC--UCAAGCGCGa-------CGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 11379 0.69 0.413651
Target:  5'- aGCgcaCGAcGUUCGCGCgcggcuccacGCCGaaGCCGCg -3'
miRNA:   3'- gCGaa-GCU-CAAGCGCGa---------CGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 53846 0.68 0.422713
Target:  5'- gCGCggCGcggacggcaagcAGaUCGCGCUcaaGCCGGCCGa -3'
miRNA:   3'- -GCGaaGC------------UCaAGCGCGA---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 14309 0.68 0.431893
Target:  5'- uGCguggUCGAcaUCGCGCccGCCGucaguGCCGCg -3'
miRNA:   3'- gCGa---AGCUcaAGCGCGa-CGGC-----CGGCG- -5'
24035 3' -59 NC_005262.1 + 58880 0.68 0.431893
Target:  5'- aGCccgCGcGUUgGCuGCUGCCGcGCUGCg -3'
miRNA:   3'- gCGaa-GCuCAAgCG-CGACGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 36230 0.68 0.441188
Target:  5'- aGCUggUCGA--UCGCGCUGgCGGUgcuCGCc -3'
miRNA:   3'- gCGA--AGCUcaAGCGCGACgGCCG---GCG- -5'
24035 3' -59 NC_005262.1 + 56958 0.68 0.441188
Target:  5'- gCGCgggCGAGUUCGCggGCgugGUCGGCaagacCGCc -3'
miRNA:   3'- -GCGaa-GCUCAAGCG--CGa--CGGCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 11770 0.68 0.44965
Target:  5'- gGUUcCGaAGUUgCGCGCgaagcucUGCCGGCCaGCg -3'
miRNA:   3'- gCGAaGC-UCAA-GCGCG-------ACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 48600 0.68 0.450596
Target:  5'- uGCaggUCGAGcgCGCuguuaccugcgGCUGCCGucgcGCCGCc -3'
miRNA:   3'- gCGa--AGCUCaaGCG-----------CGACGGC----CGGCG- -5'
24035 3' -59 NC_005262.1 + 4965 0.68 0.450596
Target:  5'- aGCaggUCGAGUcgGCGCUcggcaaGCUGcGCCGCg -3'
miRNA:   3'- gCGa--AGCUCAagCGCGA------CGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 55221 0.68 0.450596
Target:  5'- uCGCUUCG---UCGCGCa---GGCCGCg -3'
miRNA:   3'- -GCGAAGCucaAGCGCGacggCCGGCG- -5'
24035 3' -59 NC_005262.1 + 12097 0.68 0.460113
Target:  5'- aCGUUUCGGGcgcaaUCaGCGCcGCCGuGCgCGCg -3'
miRNA:   3'- -GCGAAGCUCa----AG-CGCGaCGGC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 59485 0.68 0.469735
Target:  5'- gCGCgugCGAugUCGCGC-GCCuGCUGCg -3'
miRNA:   3'- -GCGaa-GCUcaAGCGCGaCGGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.