miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 44125 0.66 0.56035
Target:  5'- gCGCaUCGGcGUUccCGCGUU-CCGGCCGg -3'
miRNA:   3'- -GCGaAGCU-CAA--GCGCGAcGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 51783 0.66 0.559311
Target:  5'- cCGCgcaCGAa--CGCGCUcacagugucgaucGCCGGCUGCu -3'
miRNA:   3'- -GCGaa-GCUcaaGCGCGA-------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 24927 0.66 0.549987
Target:  5'- gGCgcaGGGUgaUCG-GCacggcGCCGGCCGCg -3'
miRNA:   3'- gCGaagCUCA--AGCgCGa----CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 51450 0.66 0.549987
Target:  5'- gGCgUCGcGgacggCGCGgUGCCGaGCUGCa -3'
miRNA:   3'- gCGaAGCuCaa---GCGCgACGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 6649 0.66 0.54689
Target:  5'- gCGCUUCGA--UCGCGUcGCCGuccucgauccacgaGCgGCg -3'
miRNA:   3'- -GCGAAGCUcaAGCGCGaCGGC--------------CGgCG- -5'
24035 3' -59 NC_005262.1 + 8318 0.66 0.539685
Target:  5'- gGCUUCGAGcUUCGCcgacaGCUcaUGGcCCGCg -3'
miRNA:   3'- gCGAAGCUC-AAGCG-----CGAcgGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 292 0.66 0.539685
Target:  5'- uGC-UCGuGcgCGCGCUGCggaucgucacCGGCaCGCu -3'
miRNA:   3'- gCGaAGCuCaaGCGCGACG----------GCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 25728 0.66 0.539685
Target:  5'- uGCaggcCGAGgcgaUCGCGCagGCCGgcaaGCCGCu -3'
miRNA:   3'- gCGaa--GCUCa---AGCGCGa-CGGC----CGGCG- -5'
24035 3' -59 NC_005262.1 + 50185 0.66 0.537632
Target:  5'- gGCUUCu-GUUCGCGCggcgcggguucgGUCGGCgcaGCg -3'
miRNA:   3'- gCGAAGcuCAAGCGCGa-----------CGGCCGg--CG- -5'
24035 3' -59 NC_005262.1 + 49316 0.67 0.529449
Target:  5'- uCGCgcgCGGacugCGCGCcGCCgaGGCCGCc -3'
miRNA:   3'- -GCGaa-GCUcaa-GCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 49809 0.67 0.529449
Target:  5'- gGCUUCGgccgccGGUUCGcCGC--CCGGCaCGCc -3'
miRNA:   3'- gCGAAGC------UCAAGC-GCGacGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 2827 0.67 0.529449
Target:  5'- gCGCcUCGAccucGUUUGCGC-GCUGGCgUGCc -3'
miRNA:   3'- -GCGaAGCU----CAAGCGCGaCGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 2202 0.67 0.529449
Target:  5'- gGCUUCGA--UCGCGCggcacaucgcGUCGaaGCCGCu -3'
miRNA:   3'- gCGAAGCUcaAGCGCGa---------CGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 50293 0.67 0.529449
Target:  5'- aGCccgUGAcGgcCGCGCggauugaggaGCCGGCCGCa -3'
miRNA:   3'- gCGaa-GCU-CaaGCGCGa---------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 43000 0.67 0.529449
Target:  5'- cCGCUUCGuG-UCGgGCcaguucuUCGGCCGCu -3'
miRNA:   3'- -GCGAAGCuCaAGCgCGac-----GGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 27655 0.67 0.519284
Target:  5'- gGCUUC----UCGCGCUGCgCGGCguccuCGCc -3'
miRNA:   3'- gCGAAGcucaAGCGCGACG-GCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 17948 0.67 0.519284
Target:  5'- cCGUggUCGAccUCGUaGCUGUcgaCGGCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCG-CGACG---GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 5285 0.67 0.519284
Target:  5'- aCGCccUCGG--UCGCGCcgGCCGcGcCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCGCGa-CGGC-C-GGCG- -5'
24035 3' -59 NC_005262.1 + 54901 0.67 0.513223
Target:  5'- gCGCcgCGccAGUUCGacggcucgcaccugaCGCUGCCGGgCGUg -3'
miRNA:   3'- -GCGaaGC--UCAAGC---------------GCGACGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 11651 0.67 0.509198
Target:  5'- gGCgcCGGcgUCGCGCUGCacgcuGGCCGg -3'
miRNA:   3'- gCGaaGCUcaAGCGCGACGg----CCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.