miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 53049 0.67 0.509198
Target:  5'- gGCgUgGAGUacgaCGCGCUGaCCGG-CGCg -3'
miRNA:   3'- gCGaAgCUCAa---GCGCGAC-GGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 11651 0.67 0.509198
Target:  5'- gGCgcCGGcgUCGCGCUGCacgcuGGCCGg -3'
miRNA:   3'- gCGaaGCUcaAGCGCGACGg----CCGGCg -5'
24035 3' -59 NC_005262.1 + 21446 0.67 0.509198
Target:  5'- aGCUggUCGAGUUC-CGCcGCuuugCGuGCCGCu -3'
miRNA:   3'- gCGA--AGCUCAAGcGCGaCG----GC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 48373 0.67 0.505187
Target:  5'- gGCcUCGAGguuguuccaagcaUCGCGCUGCCcGGCauaCGUc -3'
miRNA:   3'- gCGaAGCUCa------------AGCGCGACGG-CCG---GCG- -5'
24035 3' -59 NC_005262.1 + 21444 0.67 0.499196
Target:  5'- gCGC-UCGcug-CGCGCgGCCuuGGCCGCc -3'
miRNA:   3'- -GCGaAGCucaaGCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 40581 0.67 0.499196
Target:  5'- uGCcgCGAccgUCGCGCUGaCGGUgGCg -3'
miRNA:   3'- gCGaaGCUca-AGCGCGACgGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 50921 0.67 0.489281
Target:  5'- gGCaUCGAGcaCGaaacgaagaUGgUGCCGGCCGCc -3'
miRNA:   3'- gCGaAGCUCaaGC---------GCgACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 32299 0.67 0.489281
Target:  5'- gCGCgaacgUCGAGgcagcgcgUGCGCUGUUcaugGGCCGUc -3'
miRNA:   3'- -GCGa----AGCUCaa------GCGCGACGG----CCGGCG- -5'
24035 3' -59 NC_005262.1 + 41100 0.67 0.489281
Target:  5'- gGCUgaagCGAGaUCGCGgUGCCaucagcagcgaGcGCCGCc -3'
miRNA:   3'- gCGAa---GCUCaAGCGCgACGG-----------C-CGGCG- -5'
24035 3' -59 NC_005262.1 + 53784 0.67 0.489281
Target:  5'- aCGCggcCGGGUUCuGCGC-GCCcGGCUGa -3'
miRNA:   3'- -GCGaa-GCUCAAG-CGCGaCGG-CCGGCg -5'
24035 3' -59 NC_005262.1 + 43943 0.67 0.483376
Target:  5'- uCGCgcCGAGgUccugccggccaccgcCGCGCgcgGCCGGcCCGCg -3'
miRNA:   3'- -GCGaaGCUCaA---------------GCGCGa--CGGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 9105 0.67 0.479459
Target:  5'- aCGUUaCGGGUUCGUGCguccGCCcuaucaugcGGCCGa -3'
miRNA:   3'- -GCGAaGCUCAAGCGCGa---CGG---------CCGGCg -5'
24035 3' -59 NC_005262.1 + 40442 0.67 0.479459
Target:  5'- uCGCcgacgaUCGAcaUCaGCGC-GCCGGCCGUg -3'
miRNA:   3'- -GCGa-----AGCUcaAG-CGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 50254 0.67 0.479459
Target:  5'- uGCUUCGucAGguaGCGCaGgCGGUCGCg -3'
miRNA:   3'- gCGAAGC--UCaagCGCGaCgGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 33988 0.67 0.479459
Target:  5'- cCGCUacCGA--UCGgGCcGCCGGCCGa -3'
miRNA:   3'- -GCGAa-GCUcaAGCgCGaCGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 1139 0.67 0.479459
Target:  5'- cCGCUgCGGGcUUCGaUGCUGCCGcGCgGg -3'
miRNA:   3'- -GCGAaGCUC-AAGC-GCGACGGC-CGgCg -5'
24035 3' -59 NC_005262.1 + 35666 0.67 0.478482
Target:  5'- cCGCgcCGAGcacaacaUUCGCGCUcuuucccgcGCCGGCgaGCg -3'
miRNA:   3'- -GCGaaGCUC-------AAGCGCGA---------CGGCCGg-CG- -5'
24035 3' -59 NC_005262.1 + 55127 0.68 0.473613
Target:  5'- uGCUcgCGcAGUUCGCacgcgaauuccucgaGCUcuacCCGGCCGCg -3'
miRNA:   3'- gCGAa-GC-UCAAGCG---------------CGAc---GGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 59485 0.68 0.469735
Target:  5'- gCGCgugCGAugUCGCGC-GCCuGCUGCg -3'
miRNA:   3'- -GCGaa-GCUcaAGCGCGaCGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 24469 0.68 0.469735
Target:  5'- gCGCUgcacggcaCGAGcgUCGCGCuUGCCGcGaUCGCa -3'
miRNA:   3'- -GCGAa-------GCUCa-AGCGCG-ACGGC-C-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.