Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24035 | 3' | -59 | NC_005262.1 | + | 12097 | 0.68 | 0.460113 |
Target: 5'- aCGUUUCGGGcgcaaUCaGCGCcGCCGuGCgCGCg -3' miRNA: 3'- -GCGAAGCUCa----AG-CGCGaCGGC-CG-GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 4965 | 0.68 | 0.450596 |
Target: 5'- aGCaggUCGAGUcgGCGCUcggcaaGCUGcGCCGCg -3' miRNA: 3'- gCGa--AGCUCAagCGCGA------CGGC-CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 48600 | 0.68 | 0.450596 |
Target: 5'- uGCaggUCGAGcgCGCuguuaccugcgGCUGCCGucgcGCCGCc -3' miRNA: 3'- gCGa--AGCUCaaGCG-----------CGACGGC----CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 55221 | 0.68 | 0.450596 |
Target: 5'- uCGCUUCG---UCGCGCa---GGCCGCg -3' miRNA: 3'- -GCGAAGCucaAGCGCGacggCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 11770 | 0.68 | 0.44965 |
Target: 5'- gGUUcCGaAGUUgCGCGCgaagcucUGCCGGCCaGCg -3' miRNA: 3'- gCGAaGC-UCAA-GCGCG-------ACGGCCGG-CG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 36230 | 0.68 | 0.441188 |
Target: 5'- aGCUggUCGA--UCGCGCUGgCGGUgcuCGCc -3' miRNA: 3'- gCGA--AGCUcaAGCGCGACgGCCG---GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 56958 | 0.68 | 0.441188 |
Target: 5'- gCGCgggCGAGUUCGCggGCgugGUCGGCaagacCGCc -3' miRNA: 3'- -GCGaa-GCUCAAGCG--CGa--CGGCCG-----GCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 14309 | 0.68 | 0.431893 |
Target: 5'- uGCguggUCGAcaUCGCGCccGCCGucaguGCCGCg -3' miRNA: 3'- gCGa---AGCUcaAGCGCGa-CGGC-----CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 58880 | 0.68 | 0.431893 |
Target: 5'- aGCccgCGcGUUgGCuGCUGCCGcGCUGCg -3' miRNA: 3'- gCGaa-GCuCAAgCG-CGACGGC-CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 53846 | 0.68 | 0.422713 |
Target: 5'- gCGCggCGcggacggcaagcAGaUCGCGCUcaaGCCGGCCGa -3' miRNA: 3'- -GCGaaGC------------UCaAGCGCGA---CGGCCGGCg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 11379 | 0.69 | 0.413651 |
Target: 5'- aGCgcaCGAcGUUCGCGCgcggcuccacGCCGaaGCCGCg -3' miRNA: 3'- gCGaa-GCU-CAAGCGCGa---------CGGC--CGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 26566 | 0.69 | 0.413651 |
Target: 5'- gCGCUgCGccAGUUCGCGCaggcauacGCUGGCgGCc -3' miRNA: 3'- -GCGAaGC--UCAAGCGCGa-------CGGCCGgCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 47737 | 0.69 | 0.413651 |
Target: 5'- uGUaUCuGGU--GCGCcGCCGGCCGCg -3' miRNA: 3'- gCGaAGcUCAagCGCGaCGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 5302 | 0.69 | 0.40471 |
Target: 5'- aCGCggUCGAGgcggUCGgaGCUgGCCGGCaggaGCu -3' miRNA: 3'- -GCGa-AGCUCa---AGCg-CGA-CGGCCGg---CG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 11867 | 0.69 | 0.40471 |
Target: 5'- cCGCUgucggCGAcGUguaUCGCGCgaaaGgUGGCCGCg -3' miRNA: 3'- -GCGAa----GCU-CA---AGCGCGa---CgGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 22978 | 0.69 | 0.395892 |
Target: 5'- cCGCgaUCGAGgaUCGUGCucUGCCGGCuCGa -3' miRNA: 3'- -GCGa-AGCUCa-AGCGCG--ACGGCCG-GCg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 17660 | 0.69 | 0.395892 |
Target: 5'- aGCUucuccUCGGcUUCGCGC-GCCG-CCGCg -3' miRNA: 3'- gCGA-----AGCUcAAGCGCGaCGGCcGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 17263 | 0.69 | 0.395017 |
Target: 5'- aCGCggUCGcGUccUCGCGCgcggccuUGCCGGCCu- -3' miRNA: 3'- -GCGa-AGCuCA--AGCGCG-------ACGGCCGGcg -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 48126 | 0.69 | 0.387199 |
Target: 5'- gCGCUUgCGG----GCGCgGCCGGCUGCu -3' miRNA: 3'- -GCGAA-GCUcaagCGCGaCGGCCGGCG- -5' |
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24035 | 3' | -59 | NC_005262.1 | + | 10700 | 0.69 | 0.378632 |
Target: 5'- gCGCagaUCGAGgcCGCGCgcacgcgGCCGGCgcuccCGCa -3' miRNA: 3'- -GCGa--AGCUCaaGCGCGa------CGGCCG-----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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