miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 292 0.66 0.539685
Target:  5'- uGC-UCGuGcgCGCGCUGCggaucgucacCGGCaCGCu -3'
miRNA:   3'- gCGaAGCuCaaGCGCGACG----------GCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 1139 0.67 0.479459
Target:  5'- cCGCUgCGGGcUUCGaUGCUGCCGcGCgGg -3'
miRNA:   3'- -GCGAaGCUC-AAGC-GCGACGGC-CGgCg -5'
24035 3' -59 NC_005262.1 + 2202 0.67 0.529449
Target:  5'- gGCUUCGA--UCGCGCggcacaucgcGUCGaaGCCGCu -3'
miRNA:   3'- gCGAAGCUcaAGCGCGa---------CGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 2588 0.71 0.300165
Target:  5'- cCGCUcuaUCGGGU---UGCUGCUGGUCGCc -3'
miRNA:   3'- -GCGA---AGCUCAagcGCGACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 2827 0.67 0.529449
Target:  5'- gCGCcUCGAccucGUUUGCGC-GCUGGCgUGCc -3'
miRNA:   3'- -GCGaAGCU----CAAGCGCGaCGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 4787 0.7 0.361885
Target:  5'- uCGCaugUCGGGau--CGgaGCCGGCCGCg -3'
miRNA:   3'- -GCGa--AGCUCaagcGCgaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 4965 0.68 0.450596
Target:  5'- aGCaggUCGAGUcgGCGCUcggcaaGCUGcGCCGCg -3'
miRNA:   3'- gCGa--AGCUCAagCGCGA------CGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 5285 0.67 0.519284
Target:  5'- aCGCccUCGG--UCGCGCcgGCCGcGcCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCGCGa-CGGC-C-GGCG- -5'
24035 3' -59 NC_005262.1 + 5302 0.69 0.40471
Target:  5'- aCGCggUCGAGgcggUCGgaGCUgGCCGGCaggaGCu -3'
miRNA:   3'- -GCGa-AGCUCa---AGCg-CGA-CGGCCGg---CG- -5'
24035 3' -59 NC_005262.1 + 6292 0.71 0.293048
Target:  5'- gGcCUUCGccgccuucUUGCGCUcGCCGGCCGCc -3'
miRNA:   3'- gC-GAAGCuca-----AGCGCGA-CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 6649 0.66 0.54689
Target:  5'- gCGCUUCGA--UCGCGUcGCCGuccucgauccacgaGCgGCg -3'
miRNA:   3'- -GCGAAGCUcaAGCGCGaCGGC--------------CGgCG- -5'
24035 3' -59 NC_005262.1 + 6852 0.66 0.569722
Target:  5'- gGC-UCGAcgaucaggccguaGUccUCgGCGaUGCCGGCCGCg -3'
miRNA:   3'- gCGaAGCU-------------CA--AG-CGCgACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 8318 0.66 0.539685
Target:  5'- gGCUUCGAGcUUCGCcgacaGCUcaUGGcCCGCg -3'
miRNA:   3'- gCGAAGCUC-AAGCG-----CGAcgGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 9105 0.67 0.479459
Target:  5'- aCGUUaCGGGUUCGUGCguccGCCcuaucaugcGGCCGa -3'
miRNA:   3'- -GCGAaGCUCAAGCGCGa---CGG---------CCGGCg -5'
24035 3' -59 NC_005262.1 + 10607 0.75 0.172693
Target:  5'- cCGUUUCGGccgcccccgCGCuGCUGCUGGCCGCc -3'
miRNA:   3'- -GCGAAGCUcaa------GCG-CGACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 10644 0.76 0.139824
Target:  5'- aCGCUgCGGcugCGCGCgGCCGGUCGCg -3'
miRNA:   3'- -GCGAaGCUcaaGCGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 10700 0.69 0.378632
Target:  5'- gCGCagaUCGAGgcCGCGCgcacgcgGCCGGCgcuccCGCa -3'
miRNA:   3'- -GCGa--AGCUCaaGCGCGa------CGGCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 10950 0.73 0.234871
Target:  5'- gCGCUacgCGcAGcaggcaUUCGCGCUGUCGGCgCGCc -3'
miRNA:   3'- -GCGAa--GC-UC------AAGCGCGACGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 11379 0.69 0.413651
Target:  5'- aGCgcaCGAcGUUCGCGCgcggcuccacGCCGaaGCCGCg -3'
miRNA:   3'- gCGaa-GCU-CAAGCGCGa---------CGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 11651 0.67 0.509198
Target:  5'- gGCgcCGGcgUCGCGCUGCacgcuGGCCGg -3'
miRNA:   3'- gCGaaGCUcaAGCGCGACGg----CCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.