miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 11721 0.67 0.509198
Target:  5'- uGCUUCaGGUgUUGCGCaUGCuCGGCuuCGCg -3'
miRNA:   3'- gCGAAGcUCA-AGCGCG-ACG-GCCG--GCG- -5'
24035 3' -59 NC_005262.1 + 11770 0.68 0.44965
Target:  5'- gGUUcCGaAGUUgCGCGCgaagcucUGCCGGCCaGCg -3'
miRNA:   3'- gCGAaGC-UCAA-GCGCG-------ACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 11867 0.69 0.40471
Target:  5'- cCGCUgucggCGAcGUguaUCGCGCgaaaGgUGGCCGCg -3'
miRNA:   3'- -GCGAa----GCU-CA---AGCGCGa---CgGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 12097 0.68 0.460113
Target:  5'- aCGUUUCGGGcgcaaUCaGCGCcGCCGuGCgCGCg -3'
miRNA:   3'- -GCGAAGCUCa----AG-CGCGaCGGC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 12375 0.7 0.370194
Target:  5'- aCGUUgcCGAGaaagcUCG-GCUcGCCGGCCGCg -3'
miRNA:   3'- -GCGAa-GCUCa----AGCgCGA-CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 12696 0.71 0.288842
Target:  5'- uGCggCGAGggagggCGCGCUcauccgcgacgccucGCCGGCgGCa -3'
miRNA:   3'- gCGaaGCUCaa----GCGCGA---------------CGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 12749 0.66 0.581227
Target:  5'- gGCgcaGGGUUCGcCGCgcGCCGcGCgCGCu -3'
miRNA:   3'- gCGaagCUCAAGC-GCGa-CGGC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 12800 0.7 0.34566
Target:  5'- aGCaUUGGGcggCGCGCaGCCGGCgCGUg -3'
miRNA:   3'- gCGaAGCUCaa-GCGCGaCGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 12857 0.73 0.217751
Target:  5'- uCGUgcCGAGcUUCGCGCUGCCGuGCaCGg -3'
miRNA:   3'- -GCGaaGCUC-AAGCGCGACGGC-CG-GCg -5'
24035 3' -59 NC_005262.1 + 12918 0.71 0.293048
Target:  5'- gGUUcccgCGAGgcCGCGCUccuucuucacgcGCCGGCUGCg -3'
miRNA:   3'- gCGAa---GCUCaaGCGCGA------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 14309 0.68 0.431893
Target:  5'- uGCguggUCGAcaUCGCGCccGCCGucaguGCCGCg -3'
miRNA:   3'- gCGa---AGCUcaAGCGCGa-CGGC-----CGGCG- -5'
24035 3' -59 NC_005262.1 + 16620 0.71 0.319291
Target:  5'- gCGUUUCGAGcugggcgauaucgUCGUGCUGCgCGaGCaCGCg -3'
miRNA:   3'- -GCGAAGCUCa------------AGCGCGACG-GC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 17087 0.74 0.20171
Target:  5'- aGCacgaCGAGcgCGCGCUcgGCCGGCgGCa -3'
miRNA:   3'- gCGaa--GCUCaaGCGCGA--CGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 17263 0.69 0.395017
Target:  5'- aCGCggUCGcGUccUCGCGCgcggccuUGCCGGCCu- -3'
miRNA:   3'- -GCGa-AGCuCA--AGCGCG-------ACGGCCGGcg -5'
24035 3' -59 NC_005262.1 + 17660 0.69 0.395892
Target:  5'- aGCUucuccUCGGcUUCGCGC-GCCG-CCGCg -3'
miRNA:   3'- gCGA-----AGCUcAAGCGCGaCGGCcGGCG- -5'
24035 3' -59 NC_005262.1 + 17711 0.78 0.109766
Target:  5'- uGCUcggCGAGcUCGCGCUGCUGG-CGCu -3'
miRNA:   3'- gCGAa--GCUCaAGCGCGACGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 17752 0.66 0.581227
Target:  5'- cCGCUUCcAGcucggCGCGCUGgCGGgCGa -3'
miRNA:   3'- -GCGAAGcUCaa---GCGCGACgGCCgGCg -5'
24035 3' -59 NC_005262.1 + 17948 0.67 0.519284
Target:  5'- cCGUggUCGAccUCGUaGCUGUcgaCGGCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCG-CGACG---GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 18291 0.76 0.14746
Target:  5'- cCGUUUCGGGUagGCGC-GCCGGuUCGCu -3'
miRNA:   3'- -GCGAAGCUCAagCGCGaCGGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 18602 0.66 0.581227
Target:  5'- aGCUUCGAGgugcUGCGC-GCuCGGCUu- -3'
miRNA:   3'- gCGAAGCUCaa--GCGCGaCG-GCCGGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.