miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 21444 0.67 0.499196
Target:  5'- gCGC-UCGcug-CGCGCgGCCuuGGCCGCc -3'
miRNA:   3'- -GCGaAGCucaaGCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 21446 0.67 0.509198
Target:  5'- aGCUggUCGAGUUC-CGCcGCuuugCGuGCCGCu -3'
miRNA:   3'- gCGA--AGCUCAAGcGCGaCG----GC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 21685 0.66 0.56035
Target:  5'- aGCggCGGcgcCGCGCUGCUGuaCGCg -3'
miRNA:   3'- gCGaaGCUcaaGCGCGACGGCcgGCG- -5'
24035 3' -59 NC_005262.1 + 22206 0.69 0.377783
Target:  5'- aCGC--CGGGcUCGCGCUcgacaagcucacgGCCGcGCCGCc -3'
miRNA:   3'- -GCGaaGCUCaAGCGCGA-------------CGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 22978 0.69 0.395892
Target:  5'- cCGCgaUCGAGgaUCGUGCucUGCCGGCuCGa -3'
miRNA:   3'- -GCGa-AGCUCa-AGCGCG--ACGGCCG-GCg -5'
24035 3' -59 NC_005262.1 + 23449 0.71 0.322313
Target:  5'- gGcCUUCGccgccgCGCGCUucacGCCGGCCGUg -3'
miRNA:   3'- gC-GAAGCucaa--GCGCGA----CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 24469 0.68 0.469735
Target:  5'- gCGCUgcacggcaCGAGcgUCGCGCuUGCCGcGaUCGCa -3'
miRNA:   3'- -GCGAa-------GCUCa-AGCGCG-ACGGC-C-GGCG- -5'
24035 3' -59 NC_005262.1 + 24927 0.66 0.549987
Target:  5'- gGCgcaGGGUgaUCG-GCacggcGCCGGCCGCg -3'
miRNA:   3'- gCGaagCUCA--AGCgCGa----CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 25728 0.66 0.539685
Target:  5'- uGCaggcCGAGgcgaUCGCGCagGCCGgcaaGCCGCu -3'
miRNA:   3'- gCGaa--GCUCa---AGCGCGa-CGGC----CGGCG- -5'
24035 3' -59 NC_005262.1 + 26396 0.66 0.591728
Target:  5'- uGCUUCGGgcucuuGUUCGuCGuCUGCCccugacgcacguGGuCCGCg -3'
miRNA:   3'- gCGAAGCU------CAAGC-GC-GACGG------------CC-GGCG- -5'
24035 3' -59 NC_005262.1 + 26566 0.69 0.413651
Target:  5'- gCGCUgCGccAGUUCGCGCaggcauacGCUGGCgGCc -3'
miRNA:   3'- -GCGAaGC--UCAAGCGCGa-------CGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 27655 0.67 0.519284
Target:  5'- gGCUUC----UCGCGCUGCgCGGCguccuCGCc -3'
miRNA:   3'- gCGAAGcucaAGCGCGACG-GCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 28716 0.66 0.581227
Target:  5'- ----aCGAGUUC-CGCcGCgaGGCCGCg -3'
miRNA:   3'- gcgaaGCUCAAGcGCGaCGg-CCGGCG- -5'
24035 3' -59 NC_005262.1 + 32299 0.67 0.489281
Target:  5'- gCGCgaacgUCGAGgcagcgcgUGCGCUGUUcaugGGCCGUc -3'
miRNA:   3'- -GCGa----AGCUCaa------GCGCGACGG----CCGGCG- -5'
24035 3' -59 NC_005262.1 + 32382 0.71 0.300165
Target:  5'- gCGCUgccUCGAcGUUCGCGC--CCGcGCCGUa -3'
miRNA:   3'- -GCGA---AGCU-CAAGCGCGacGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 32673 1.11 0.000427
Target:  5'- aCGCUUCGAGUUCGCGCUGCCGGCCGCc -3'
miRNA:   3'- -GCGAAGCUCAAGCGCGACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 32713 0.76 0.132552
Target:  5'- gGCgacaucaUCGAGcucggCGUGCUGCCGGCCGa -3'
miRNA:   3'- gCGa------AGCUCaa---GCGCGACGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 33004 0.7 0.353706
Target:  5'- gCGCUggCGAGcgUCGCGCgugcgacgccGCCGGCUugGCc -3'
miRNA:   3'- -GCGAa-GCUCa-AGCGCGa---------CGGCCGG--CG- -5'
24035 3' -59 NC_005262.1 + 33261 0.66 0.591728
Target:  5'- gCGCUUccugucgauccgCGAGgcguaccgcaUCGCGCgcacGCCGGgCGCc -3'
miRNA:   3'- -GCGAA------------GCUCa---------AGCGCGa---CGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 33654 0.66 0.591728
Target:  5'- gGCUgaCGAG--CGCGCcucGCUGGUCGCc -3'
miRNA:   3'- gCGAa-GCUCaaGCGCGa--CGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.