miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 60442 0.66 0.56035
Target:  5'- aGCgacCGAGaaCGCGCUgcGCCuGUCGCu -3'
miRNA:   3'- gCGaa-GCUCaaGCGCGA--CGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 59485 0.68 0.469735
Target:  5'- gCGCgugCGAugUCGCGC-GCCuGCUGCg -3'
miRNA:   3'- -GCGaa-GCUcaAGCGCGaCGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 59454 0.66 0.56451
Target:  5'- gCGCcUgGAGcUCgGCGUUGCCGGCguacuuugcgaugauCGCg -3'
miRNA:   3'- -GCGaAgCUCaAG-CGCGACGGCCG---------------GCG- -5'
24035 3' -59 NC_005262.1 + 58940 0.71 0.297302
Target:  5'- gCGCUUCucGGUcggCGCGCagcagucgaaccaGCCGGCCGCc -3'
miRNA:   3'- -GCGAAGc-UCAa--GCGCGa------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 58880 0.68 0.431893
Target:  5'- aGCccgCGcGUUgGCuGCUGCCGcGCUGCg -3'
miRNA:   3'- gCGaa-GCuCAAgCG-CGACGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 58743 0.7 0.361885
Target:  5'- gGCUugaUCGuAGaacUCGCGC-GcCCGGCCGCu -3'
miRNA:   3'- gCGA---AGC-UCa--AGCGCGaC-GGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 57668 0.66 0.581227
Target:  5'- gGCacgaUCGAcuucUCGCGC-GCCGGgCGCg -3'
miRNA:   3'- gCGa---AGCUca--AGCGCGaCGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 57518 0.69 0.378632
Target:  5'- cCGCggaCG-GUgccggaGCGUUGUCGGCCGCc -3'
miRNA:   3'- -GCGaa-GCuCAag----CGCGACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 56958 0.68 0.441188
Target:  5'- gCGCgggCGAGUUCGCggGCgugGUCGGCaagacCGCc -3'
miRNA:   3'- -GCGaa-GCUCAAGCG--CGa--CGGCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 55795 0.71 0.293048
Target:  5'- gGCUUCGAGcagaaCGCcGCCGGCgGCu -3'
miRNA:   3'- gCGAAGCUCaagc-GCGaCGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 55221 0.68 0.450596
Target:  5'- uCGCUUCG---UCGCGCa---GGCCGCg -3'
miRNA:   3'- -GCGAAGCucaAGCGCGacggCCGGCG- -5'
24035 3' -59 NC_005262.1 + 55127 0.68 0.473613
Target:  5'- uGCUcgCGcAGUUCGCacgcgaauuccucgaGCUcuacCCGGCCGCg -3'
miRNA:   3'- gCGAa-GC-UCAAGCG---------------CGAc---GGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 54901 0.67 0.513223
Target:  5'- gCGCcgCGccAGUUCGacggcucgcaccugaCGCUGCCGGgCGUg -3'
miRNA:   3'- -GCGaaGC--UCAAGC---------------GCGACGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 54545 0.66 0.56035
Target:  5'- gCGCcUCGAcgUUGCGCUgauacuuccgGUCGGCgCGCg -3'
miRNA:   3'- -GCGaAGCUcaAGCGCGA----------CGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 53846 0.68 0.422713
Target:  5'- gCGCggCGcggacggcaagcAGaUCGCGCUcaaGCCGGCCGa -3'
miRNA:   3'- -GCGaaGC------------UCaAGCGCGA---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 53784 0.67 0.489281
Target:  5'- aCGCggcCGGGUUCuGCGC-GCCcGGCUGa -3'
miRNA:   3'- -GCGaa-GCUCAAG-CGCGaCGG-CCGGCg -5'
24035 3' -59 NC_005262.1 + 53440 0.66 0.56035
Target:  5'- gCGCcgaUCaGGUUCGCGCgGUCGGCgagguagcggCGCg -3'
miRNA:   3'- -GCGa--AGcUCAAGCGCGaCGGCCG----------GCG- -5'
24035 3' -59 NC_005262.1 + 53049 0.67 0.509198
Target:  5'- gGCgUgGAGUacgaCGCGCUGaCCGG-CGCg -3'
miRNA:   3'- gCGaAgCUCAa---GCGCGAC-GGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 51924 0.71 0.300165
Target:  5'- gCGCUUC-AGcacUUCGCGaC-GUCGGCCGCg -3'
miRNA:   3'- -GCGAAGcUC---AAGCGC-GaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 51783 0.66 0.559311
Target:  5'- cCGCgcaCGAa--CGCGCUcacagugucgaucGCCGGCUGCu -3'
miRNA:   3'- -GCGaa-GCUcaaGCGCGA-------------CGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.