miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 51450 0.66 0.549987
Target:  5'- gGCgUCGcGgacggCGCGgUGCCGaGCUGCa -3'
miRNA:   3'- gCGaAGCuCaa---GCGCgACGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 50921 0.67 0.489281
Target:  5'- gGCaUCGAGcaCGaaacgaagaUGgUGCCGGCCGCc -3'
miRNA:   3'- gCGaAGCUCaaGC---------GCgACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 50293 0.67 0.529449
Target:  5'- aGCccgUGAcGgcCGCGCggauugaggaGCCGGCCGCa -3'
miRNA:   3'- gCGaa-GCU-CaaGCGCGa---------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 50264 0.76 0.14746
Target:  5'- cCGCaaCGAGggCGCGCccgcGCCGGCCGa -3'
miRNA:   3'- -GCGaaGCUCaaGCGCGa---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 50254 0.67 0.479459
Target:  5'- uGCUUCGucAGguaGCGCaGgCGGUCGCg -3'
miRNA:   3'- gCGAAGC--UCaagCGCGaCgGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 50185 0.66 0.537632
Target:  5'- gGCUUCu-GUUCGCGCggcgcggguucgGUCGGCgcaGCg -3'
miRNA:   3'- gCGAAGcuCAAGCGCGa-----------CGGCCGg--CG- -5'
24035 3' -59 NC_005262.1 + 49809 0.67 0.529449
Target:  5'- gGCUUCGgccgccGGUUCGcCGC--CCGGCaCGCc -3'
miRNA:   3'- gCGAAGC------UCAAGC-GCGacGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 49766 0.66 0.56035
Target:  5'- cCGCgccCGAGgcucCGgcCGCUGCCGcGCCGg -3'
miRNA:   3'- -GCGaa-GCUCaa--GC--GCGACGGC-CGGCg -5'
24035 3' -59 NC_005262.1 + 49316 0.67 0.529449
Target:  5'- uCGCgcgCGGacugCGCGCcGCCgaGGCCGCc -3'
miRNA:   3'- -GCGaa-GCUcaa-GCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 48656 0.7 0.353706
Target:  5'- aCGCagcagGAGcUCGacaaGCUGCCGGCCaGCg -3'
miRNA:   3'- -GCGaag--CUCaAGCg---CGACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 48600 0.68 0.450596
Target:  5'- uGCaggUCGAGcgCGCuguuaccugcgGCUGCCGucgcGCCGCc -3'
miRNA:   3'- gCGa--AGCUCaaGCG-----------CGACGGC----CGGCG- -5'
24035 3' -59 NC_005262.1 + 48373 0.67 0.505187
Target:  5'- gGCcUCGAGguuguuccaagcaUCGCGCUGCCcGGCauaCGUc -3'
miRNA:   3'- gCGaAGCUCa------------AGCGCGACGG-CCG---GCG- -5'
24035 3' -59 NC_005262.1 + 48126 0.69 0.387199
Target:  5'- gCGCUUgCGG----GCGCgGCCGGCUGCu -3'
miRNA:   3'- -GCGAA-GCUcaagCGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 47842 0.77 0.112781
Target:  5'- gCGCgaugcCGGGUUCGcCGCgGCCGGCgGCg -3'
miRNA:   3'- -GCGaa---GCUCAAGC-GCGaCGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 47737 0.69 0.413651
Target:  5'- uGUaUCuGGU--GCGCcGCCGGCCGCg -3'
miRNA:   3'- gCGaAGcUCAagCGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 46528 0.66 0.56035
Target:  5'- cCGCgcaGcAGcccaGCGCggcGCCGGCCGCc -3'
miRNA:   3'- -GCGaagC-UCaag-CGCGa--CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 45697 0.72 0.259439
Target:  5'- gCGCaUCGAGggcCG-GCaGCCGGCCGUg -3'
miRNA:   3'- -GCGaAGCUCaa-GCgCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 45497 0.66 0.56035
Target:  5'- gGC--CGAGUuuugCGCgGCUGCCuGCUGCu -3'
miRNA:   3'- gCGaaGCUCAa---GCG-CGACGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 45358 0.71 0.317788
Target:  5'- gCGCgga-AGUUCGCGUucgacgcuccgagguUGCCGGUCGCc -3'
miRNA:   3'- -GCGaagcUCAAGCGCG---------------ACGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 44125 0.66 0.56035
Target:  5'- gCGCaUCGGcGUUccCGCGUU-CCGGCCGg -3'
miRNA:   3'- -GCGaAGCU-CAA--GCGCGAcGGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.