miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 4787 0.7 0.361885
Target:  5'- uCGCaugUCGGGau--CGgaGCCGGCCGCg -3'
miRNA:   3'- -GCGa--AGCUCaagcGCgaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 42414 0.72 0.279211
Target:  5'- gGCUUUcAGgcgGCGCcaGCCGGCCGCa -3'
miRNA:   3'- gCGAAGcUCaagCGCGa-CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 6292 0.71 0.293048
Target:  5'- gGcCUUCGccgccuucUUGCGCUcGCCGGCCGCc -3'
miRNA:   3'- gC-GAAGCuca-----AGCGCGA-CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 55795 0.71 0.293048
Target:  5'- gGCUUCGAGcagaaCGCcGCCGGCgGCu -3'
miRNA:   3'- gCGAAGCUCaagc-GCGaCGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 58940 0.71 0.297302
Target:  5'- gCGCUUCucGGUcggCGCGCagcagucgaaccaGCCGGCCGCc -3'
miRNA:   3'- -GCGAAGc-UCAa--GCGCGa------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 16620 0.71 0.319291
Target:  5'- gCGUUUCGAGcugggcgauaucgUCGUGCUGCgCGaGCaCGCg -3'
miRNA:   3'- -GCGAAGCUCa------------AGCGCGACG-GC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 34951 0.7 0.337745
Target:  5'- gGCggCaAGUUCGaCGCggcGCuCGGCCGCa -3'
miRNA:   3'- gCGaaGcUCAAGC-GCGa--CG-GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 12800 0.7 0.34566
Target:  5'- aGCaUUGGGcggCGCGCaGCCGGCgCGUg -3'
miRNA:   3'- gCGaAGCUCaa-GCGCGaCGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 48656 0.7 0.353706
Target:  5'- aCGCagcagGAGcUCGacaaGCUGCCGGCCaGCg -3'
miRNA:   3'- -GCGaag--CUCaAGCg---CGACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 45697 0.72 0.259439
Target:  5'- gCGCaUCGAGggcCG-GCaGCCGGCCGUg -3'
miRNA:   3'- -GCGaAGCUCaa-GCgCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 33879 0.72 0.246902
Target:  5'- cCGCgcgCGAGacgaUCGUGCgucgGCCGGCgGCc -3'
miRNA:   3'- -GCGaa-GCUCa---AGCGCGa---CGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 43807 0.72 0.244455
Target:  5'- aGCuUUCGGGcgaUCGCgGCgacacggccgcggGCCGGCCGCg -3'
miRNA:   3'- gCG-AAGCUCa--AGCG-CGa------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 32713 0.76 0.132552
Target:  5'- gGCgacaucaUCGAGcucggCGUGCUGCCGGCCGa -3'
miRNA:   3'- gCGa------AGCUCaa---GCGCGACGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 18291 0.76 0.14746
Target:  5'- cCGUUUCGGGUagGCGC-GCCGGuUCGCu -3'
miRNA:   3'- -GCGAAGCUCAagCGCGaCGGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 50264 0.76 0.14746
Target:  5'- cCGCaaCGAGggCGCGCccgcGCCGGCCGa -3'
miRNA:   3'- -GCGaaGCUCaaGCGCGa---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 41209 0.75 0.168235
Target:  5'- cCGCUUCGAGcacCGUauGaCUGCCGGCaCGCu -3'
miRNA:   3'- -GCGAAGCUCaa-GCG--C-GACGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 40329 0.74 0.196595
Target:  5'- cCGCUUCGAGcaUCG-GCUcacgGCCGGCgCGCu -3'
miRNA:   3'- -GCGAAGCUCa-AGCgCGA----CGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 12857 0.73 0.217751
Target:  5'- uCGUgcCGAGcUUCGCGCUGCCGuGCaCGg -3'
miRNA:   3'- -GCGaaGCUC-AAGCGCGACGGC-CG-GCg -5'
24035 3' -59 NC_005262.1 + 34290 0.73 0.233695
Target:  5'- gCGCUgucgaaggacagCGAGUUCGCGaacgGCaCGGUCGCc -3'
miRNA:   3'- -GCGAa-----------GCUCAAGCGCga--CG-GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 10950 0.73 0.234871
Target:  5'- gCGCUacgCGcAGcaggcaUUCGCGCUGUCGGCgCGCc -3'
miRNA:   3'- -GCGAa--GC-UC------AAGCGCGACGGCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.