miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 40329 0.74 0.196595
Target:  5'- cCGCUUCGAGcaUCG-GCUcacgGCCGGCgCGCu -3'
miRNA:   3'- -GCGAAGCUCa-AGCgCGA----CGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 41209 0.75 0.168235
Target:  5'- cCGCUUCGAGcacCGUauGaCUGCCGGCaCGCu -3'
miRNA:   3'- -GCGAAGCUCaa-GCG--C-GACGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 50264 0.76 0.14746
Target:  5'- cCGCaaCGAGggCGCGCccgcGCCGGCCGa -3'
miRNA:   3'- -GCGaaGCUCaaGCGCGa---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 18291 0.76 0.14746
Target:  5'- cCGUUUCGGGUagGCGC-GCCGGuUCGCu -3'
miRNA:   3'- -GCGAAGCUCAagCGCGaCGGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 32713 0.76 0.132552
Target:  5'- gGCgacaucaUCGAGcucggCGUGCUGCCGGCCGa -3'
miRNA:   3'- gCGa------AGCUCaa---GCGCGACGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 55795 0.71 0.293048
Target:  5'- gGCUUCGAGcagaaCGCcGCCGGCgGCu -3'
miRNA:   3'- gCGAAGCUCaagc-GCGaCGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 58940 0.71 0.297302
Target:  5'- gCGCUUCucGGUcggCGCGCagcagucgaaccaGCCGGCCGCc -3'
miRNA:   3'- -GCGAAGc-UCAa--GCGCGa------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 53846 0.68 0.422713
Target:  5'- gCGCggCGcggacggcaagcAGaUCGCGCUcaaGCCGGCCGa -3'
miRNA:   3'- -GCGaaGC------------UCaAGCGCGA---CGGCCGGCg -5'
24035 3' -59 NC_005262.1 + 47737 0.69 0.413651
Target:  5'- uGUaUCuGGU--GCGCcGCCGGCCGCg -3'
miRNA:   3'- gCGaAGcUCAagCGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 26566 0.69 0.413651
Target:  5'- gCGCUgCGccAGUUCGCGCaggcauacGCUGGCgGCc -3'
miRNA:   3'- -GCGAaGC--UCAAGCGCGa-------CGGCCGgCG- -5'
24035 3' -59 NC_005262.1 + 11379 0.69 0.413651
Target:  5'- aGCgcaCGAcGUUCGCGCgcggcuccacGCCGaaGCCGCg -3'
miRNA:   3'- gCGaa-GCU-CAAGCGCGa---------CGGC--CGGCG- -5'
24035 3' -59 NC_005262.1 + 11867 0.69 0.40471
Target:  5'- cCGCUgucggCGAcGUguaUCGCGCgaaaGgUGGCCGCg -3'
miRNA:   3'- -GCGAa----GCU-CA---AGCGCGa---CgGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 5302 0.69 0.40471
Target:  5'- aCGCggUCGAGgcggUCGgaGCUgGCCGGCaggaGCu -3'
miRNA:   3'- -GCGa-AGCUCa---AGCg-CGA-CGGCCGg---CG- -5'
24035 3' -59 NC_005262.1 + 10700 0.69 0.378632
Target:  5'- gCGCagaUCGAGgcCGCGCgcacgcgGCCGGCgcuccCGCa -3'
miRNA:   3'- -GCGa--AGCUCaaGCGCGa------CGGCCG-----GCG- -5'
24035 3' -59 NC_005262.1 + 22206 0.69 0.377783
Target:  5'- aCGC--CGGGcUCGCGCUcgacaagcucacgGCCGcGCCGCc -3'
miRNA:   3'- -GCGaaGCUCaAGCGCGA-------------CGGC-CGGCG- -5'
24035 3' -59 NC_005262.1 + 4787 0.7 0.361885
Target:  5'- uCGCaugUCGGGau--CGgaGCCGGCCGCg -3'
miRNA:   3'- -GCGa--AGCUCaagcGCgaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 48656 0.7 0.353706
Target:  5'- aCGCagcagGAGcUCGacaaGCUGCCGGCCaGCg -3'
miRNA:   3'- -GCGaag--CUCaAGCg---CGACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 12800 0.7 0.34566
Target:  5'- aGCaUUGGGcggCGCGCaGCCGGCgCGUg -3'
miRNA:   3'- gCGaAGCUCaa-GCGCGaCGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 34951 0.7 0.337745
Target:  5'- gGCggCaAGUUCGaCGCggcGCuCGGCCGCa -3'
miRNA:   3'- gCGaaGcUCAAGC-GCGa--CG-GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 16620 0.71 0.319291
Target:  5'- gCGUUUCGAGcugggcgauaucgUCGUGCUGCgCGaGCaCGCg -3'
miRNA:   3'- -GCGAAGCUCa------------AGCGCGACG-GC-CG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.