miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 26396 0.66 0.591728
Target:  5'- uGCUUCGGgcucuuGUUCGuCGuCUGCCccugacgcacguGGuCCGCg -3'
miRNA:   3'- gCGAAGCU------CAAGC-GC-GACGG------------CC-GGCG- -5'
24035 3' -59 NC_005262.1 + 49316 0.67 0.529449
Target:  5'- uCGCgcgCGGacugCGCGCcGCCgaGGCCGCc -3'
miRNA:   3'- -GCGaa-GCUcaa-GCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 17948 0.67 0.519284
Target:  5'- cCGUggUCGAccUCGUaGCUGUcgaCGGCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCG-CGACG---GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 17711 0.78 0.109766
Target:  5'- uGCUcggCGAGcUCGCGCUGCUGG-CGCu -3'
miRNA:   3'- gCGAa--GCUCaAGCGCGACGGCCgGCG- -5'
24035 3' -59 NC_005262.1 + 18602 0.66 0.581227
Target:  5'- aGCUUCGAGgugcUGCGC-GCuCGGCUu- -3'
miRNA:   3'- gCGAAGCUCaa--GCGCGaCG-GCCGGcg -5'
24035 3' -59 NC_005262.1 + 40807 0.66 0.580179
Target:  5'- uGC-UCGAGggcgUCaGCGCcGCCguauuauGGCCGUg -3'
miRNA:   3'- gCGaAGCUCa---AG-CGCGaCGG-------CCGGCG- -5'
24035 3' -59 NC_005262.1 + 53440 0.66 0.56035
Target:  5'- gCGCcgaUCaGGUUCGCGCgGUCGGCgagguagcggCGCg -3'
miRNA:   3'- -GCGa--AGcUCAAGCGCGaCGGCCG----------GCG- -5'
24035 3' -59 NC_005262.1 + 54545 0.66 0.56035
Target:  5'- gCGCcUCGAcgUUGCGCUgauacuuccgGUCGGCgCGCg -3'
miRNA:   3'- -GCGaAGCUcaAGCGCGA----------CGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 24927 0.66 0.549987
Target:  5'- gGCgcaGGGUgaUCG-GCacggcGCCGGCCGCg -3'
miRNA:   3'- gCGaagCUCA--AGCgCGa----CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 49809 0.67 0.529449
Target:  5'- gGCUUCGgccgccGGUUCGcCGC--CCGGCaCGCc -3'
miRNA:   3'- gCGAAGC------UCAAGC-GCGacGGCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 8318 0.66 0.539685
Target:  5'- gGCUUCGAGcUUCGCcgacaGCUcaUGGcCCGCg -3'
miRNA:   3'- gCGAAGCUC-AAGCG-----CGAcgGCC-GGCG- -5'
24035 3' -59 NC_005262.1 + 51783 0.66 0.559311
Target:  5'- cCGCgcaCGAa--CGCGCUcacagugucgaucGCCGGCUGCu -3'
miRNA:   3'- -GCGaa-GCUcaaGCGCGA-------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 34589 0.66 0.591728
Target:  5'- uCGUcUCGcAGaagUCGCGC-GCCG-CCGCg -3'
miRNA:   3'- -GCGaAGC-UCa--AGCGCGaCGGCcGGCG- -5'
24035 3' -59 NC_005262.1 + 292 0.66 0.539685
Target:  5'- uGC-UCGuGcgCGCGCUGCggaucgucacCGGCaCGCu -3'
miRNA:   3'- gCGaAGCuCaaGCGCGACG----------GCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 12749 0.66 0.581227
Target:  5'- gGCgcaGGGUUCGcCGCgcGCCGcGCgCGCu -3'
miRNA:   3'- gCGaagCUCAAGC-GCGa-CGGC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 45497 0.66 0.56035
Target:  5'- gGC--CGAGUuuugCGCgGCUGCCuGCUGCu -3'
miRNA:   3'- gCGaaGCUCAa---GCG-CGACGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 50185 0.66 0.537632
Target:  5'- gGCUUCu-GUUCGCGCggcgcggguucgGUCGGCgcaGCg -3'
miRNA:   3'- gCGAAGcuCAAGCGCGa-----------CGGCCGg--CG- -5'
24035 3' -59 NC_005262.1 + 5285 0.67 0.519284
Target:  5'- aCGCccUCGG--UCGCGCcgGCCGcGcCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCGCGa-CGGC-C-GGCG- -5'
24035 3' -59 NC_005262.1 + 17752 0.66 0.581227
Target:  5'- cCGCUUCcAGcucggCGCGCUGgCGGgCGa -3'
miRNA:   3'- -GCGAAGcUCaa---GCGCGACgGCCgGCg -5'
24035 3' -59 NC_005262.1 + 59454 0.66 0.56451
Target:  5'- gCGCcUgGAGcUCgGCGUUGCCGGCguacuuugcgaugauCGCg -3'
miRNA:   3'- -GCGaAgCUCaAG-CGCGACGGCCG---------------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.