miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24035 3' -59 NC_005262.1 + 21444 0.67 0.499196
Target:  5'- gCGC-UCGcug-CGCGCgGCCuuGGCCGCc -3'
miRNA:   3'- -GCGaAGCucaaGCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 17948 0.67 0.519284
Target:  5'- cCGUggUCGAccUCGUaGCUGUcgaCGGCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCG-CGACG---GCCGGCG- -5'
24035 3' -59 NC_005262.1 + 51783 0.66 0.559311
Target:  5'- cCGCgcaCGAa--CGCGCUcacagugucgaucGCCGGCUGCu -3'
miRNA:   3'- -GCGaa-GCUcaaGCGCGA-------------CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 17752 0.66 0.581227
Target:  5'- cCGCUUCcAGcucggCGCGCUGgCGGgCGa -3'
miRNA:   3'- -GCGAAGcUCaa---GCGCGACgGCCgGCg -5'
24035 3' -59 NC_005262.1 + 11770 0.68 0.44965
Target:  5'- gGUUcCGaAGUUgCGCGCgaagcucUGCCGGCCaGCg -3'
miRNA:   3'- gCGAaGC-UCAA-GCGCG-------ACGGCCGG-CG- -5'
24035 3' -59 NC_005262.1 + 9105 0.67 0.479459
Target:  5'- aCGUUaCGGGUUCGUGCguccGCCcuaucaugcGGCCGa -3'
miRNA:   3'- -GCGAaGCUCAAGCGCGa---CGG---------CCGGCg -5'
24035 3' -59 NC_005262.1 + 49316 0.67 0.529449
Target:  5'- uCGCgcgCGGacugCGCGCcGCCgaGGCCGCc -3'
miRNA:   3'- -GCGaa-GCUcaa-GCGCGaCGG--CCGGCG- -5'
24035 3' -59 NC_005262.1 + 12749 0.66 0.581227
Target:  5'- gGCgcaGGGUUCGcCGCgcGCCGcGCgCGCu -3'
miRNA:   3'- gCGaagCUCAAGC-GCGa-CGGC-CG-GCG- -5'
24035 3' -59 NC_005262.1 + 40442 0.67 0.479459
Target:  5'- uCGCcgacgaUCGAcaUCaGCGC-GCCGGCCGUg -3'
miRNA:   3'- -GCGa-----AGCUcaAG-CGCGaCGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 34589 0.66 0.591728
Target:  5'- uCGUcUCGcAGaagUCGCGC-GCCG-CCGCg -3'
miRNA:   3'- -GCGaAGC-UCa--AGCGCGaCGGCcGGCG- -5'
24035 3' -59 NC_005262.1 + 5285 0.67 0.519284
Target:  5'- aCGCccUCGG--UCGCGCcgGCCGcGcCCGCg -3'
miRNA:   3'- -GCGa-AGCUcaAGCGCGa-CGGC-C-GGCG- -5'
24035 3' -59 NC_005262.1 + 53784 0.67 0.489281
Target:  5'- aCGCggcCGGGUUCuGCGC-GCCcGGCUGa -3'
miRNA:   3'- -GCGaa-GCUCAAG-CGCGaCGG-CCGGCg -5'
24035 3' -59 NC_005262.1 + 292 0.66 0.539685
Target:  5'- uGC-UCGuGcgCGCGCUGCggaucgucacCGGCaCGCu -3'
miRNA:   3'- gCGaAGCuCaaGCGCGACG----------GCCG-GCG- -5'
24035 3' -59 NC_005262.1 + 24927 0.66 0.549987
Target:  5'- gGCgcaGGGUgaUCG-GCacggcGCCGGCCGCg -3'
miRNA:   3'- gCGaagCUCA--AGCgCGa----CGGCCGGCG- -5'
24035 3' -59 NC_005262.1 + 53440 0.66 0.56035
Target:  5'- gCGCcgaUCaGGUUCGCGCgGUCGGCgagguagcggCGCg -3'
miRNA:   3'- -GCGa--AGcUCAAGCGCGaCGGCCG----------GCG- -5'
24035 3' -59 NC_005262.1 + 18602 0.66 0.581227
Target:  5'- aGCUUCGAGgugcUGCGC-GCuCGGCUu- -3'
miRNA:   3'- gCGAAGCUCaa--GCGCGaCG-GCCGGcg -5'
24035 3' -59 NC_005262.1 + 17660 0.69 0.395892
Target:  5'- aGCUucuccUCGGcUUCGCGC-GCCG-CCGCg -3'
miRNA:   3'- gCGA-----AGCUcAAGCGCGaCGGCcGGCG- -5'
24035 3' -59 NC_005262.1 + 36230 0.68 0.441188
Target:  5'- aGCUggUCGA--UCGCGCUGgCGGUgcuCGCc -3'
miRNA:   3'- gCGA--AGCUcaAGCGCGACgGCCG---GCG- -5'
24035 3' -59 NC_005262.1 + 59485 0.68 0.469735
Target:  5'- gCGCgugCGAugUCGCGC-GCCuGCUGCg -3'
miRNA:   3'- -GCGaa-GCUcaAGCGCGaCGGcCGGCG- -5'
24035 3' -59 NC_005262.1 + 33988 0.67 0.479459
Target:  5'- cCGCUacCGA--UCGgGCcGCCGGCCGa -3'
miRNA:   3'- -GCGAa-GCUcaAGCgCGaCGGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.