miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24036 3' -56.6 NC_005262.1 + 11613 0.66 0.738314
Target:  5'- aCACGAUccCGCUCugcccccugcaccauCGGCuCGGCGG-CGCCg -3'
miRNA:   3'- -GUGCUA--GCGAG---------------GCUG-GCCGUUgGUGG- -5'
24036 3' -56.6 NC_005262.1 + 49761 0.66 0.734231
Target:  5'- gGCGcccgCGC-CCGAggcuCCGGCcGCUGCCg -3'
miRNA:   3'- gUGCua--GCGaGGCU----GGCCGuUGGUGG- -5'
24036 3' -56.6 NC_005262.1 + 5566 0.66 0.734231
Target:  5'- aCAUGAUCgugaaGCUCuCGAaCGGCGAgguUCGCCg -3'
miRNA:   3'- -GUGCUAG-----CGAG-GCUgGCCGUU---GGUGG- -5'
24036 3' -56.6 NC_005262.1 + 56963 0.66 0.734231
Target:  5'- gGCGAguUCGCgggCgUGGUCGGCAagACCGCCu -3'
miRNA:   3'- gUGCU--AGCGa--G-GCUGGCCGU--UGGUGG- -5'
24036 3' -56.6 NC_005262.1 + 5158 0.66 0.734231
Target:  5'- -uCGG-CGCgCUGAUCGGUGACgGCCg -3'
miRNA:   3'- guGCUaGCGaGGCUGGCCGUUGgUGG- -5'
24036 3' -56.6 NC_005262.1 + 17369 0.66 0.734231
Target:  5'- aCGCGAUCaagaaccuGCcggUCGACuCGGCGGCCgacaauGCCg -3'
miRNA:   3'- -GUGCUAG--------CGa--GGCUG-GCCGUUGG------UGG- -5'
24036 3' -56.6 NC_005262.1 + 33336 0.66 0.734231
Target:  5'- uGCG-UCGCUgCG--CGGCAccguGCCGCCg -3'
miRNA:   3'- gUGCuAGCGAgGCugGCCGU----UGGUGG- -5'
24036 3' -56.6 NC_005262.1 + 60914 0.66 0.734231
Target:  5'- -cCGAUCGCguaGGCCGGCGcaaACuCugCg -3'
miRNA:   3'- guGCUAGCGaggCUGGCCGU---UG-GugG- -5'
24036 3' -56.6 NC_005262.1 + 48128 0.66 0.734231
Target:  5'- aCGCGcUUGCgggCgCGGCCGGCuGCUGCg -3'
miRNA:   3'- -GUGCuAGCGa--G-GCUGGCCGuUGGUGg -5'
24036 3' -56.6 NC_005262.1 + 52564 0.66 0.730133
Target:  5'- aACGAUCGaggcccugucagCCGAgUCGGCGACgACUa -3'
miRNA:   3'- gUGCUAGCga----------GGCU-GGCCGUUGgUGG- -5'
24036 3' -56.6 NC_005262.1 + 63383 0.66 0.723958
Target:  5'- cCACG-UCGacgCCGAgCCaGCAGCCgGCCg -3'
miRNA:   3'- -GUGCuAGCga-GGCU-GGcCGUUGG-UGG- -5'
24036 3' -56.6 NC_005262.1 + 58801 0.66 0.723958
Target:  5'- cCGCGGUCaGCgCCu-CgGGCAuGCCGCCa -3'
miRNA:   3'- -GUGCUAG-CGaGGcuGgCCGU-UGGUGG- -5'
24036 3' -56.6 NC_005262.1 + 50892 0.66 0.723958
Target:  5'- gCGCGAagCGCUCCaugcccUCGGCGACCuuCg -3'
miRNA:   3'- -GUGCUa-GCGAGGcu----GGCCGUUGGugG- -5'
24036 3' -56.6 NC_005262.1 + 57158 0.66 0.723958
Target:  5'- -uCGGUCGacaUCC--CCGGCGACC-CCu -3'
miRNA:   3'- guGCUAGCg--AGGcuGGCCGUUGGuGG- -5'
24036 3' -56.6 NC_005262.1 + 2080 0.66 0.723958
Target:  5'- aCAUGGUCGCuUCCGGg-GGCAuggcCCAUCg -3'
miRNA:   3'- -GUGCUAGCG-AGGCUggCCGUu---GGUGG- -5'
24036 3' -56.6 NC_005262.1 + 33605 0.66 0.723958
Target:  5'- nCGCaGUCGCcCCGACgucgcaGGaaaAGCCGCCg -3'
miRNA:   3'- -GUGcUAGCGaGGCUGg-----CCg--UUGGUGG- -5'
24036 3' -56.6 NC_005262.1 + 52417 0.66 0.723958
Target:  5'- gGCGAUCGCggaGGCgCGGCAAagCGCa -3'
miRNA:   3'- gUGCUAGCGaggCUG-GCCGUUg-GUGg -5'
24036 3' -56.6 NC_005262.1 + 36417 0.66 0.713598
Target:  5'- --aGAUCaGCUuuG-CCGGCgAGCgCACCg -3'
miRNA:   3'- gugCUAG-CGAggCuGGCCG-UUG-GUGG- -5'
24036 3' -56.6 NC_005262.1 + 24734 0.66 0.713598
Target:  5'- gCugGcgCGCg-CGAUCGGCGugCgGCCg -3'
miRNA:   3'- -GugCuaGCGagGCUGGCCGUugG-UGG- -5'
24036 3' -56.6 NC_005262.1 + 59806 0.66 0.713598
Target:  5'- -uCGAggGCaCCGGCCcgcaGGCGGCCACg -3'
miRNA:   3'- guGCUagCGaGGCUGG----CCGUUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.